CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.2308.3.S1_x_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.68 86.5 Ta.2308.3.S1_x_at CA683060 - - 4e-3 At5g59140 SKP1 family protein S.X. H.G.
0.53 74.9 Ta.2305.2.S1_x_at CD909723 - - 5e+0 At5g57000 unknown protein S.X. H.G.
0.48 69.0 Ta.11141.3.S1_x_at BQ238199 - - 3e-54 At1g23490 ATARF1 (ADP-RIBOSYLATION FACTOR 1) S.X. H.G.
0.48 69.0 Ta.28727.1.A1_x_at CA722823 - - 7e-2 At3g08690 UBC11 (UBIQUITIN-CONJUGATING ENZYME 11) S.X. H.G.
0.47 67.9 Ta.30793.2.S1_x_at CA648966 - - 3e-5 At5g46030 unknown protein S.X. H.G.
0.46 66.8 Ta.3311.1.S1_at BJ274103 root hair defective 3 GTP-binding protein - 1e-28 At1g72960 root hair defective 3 GTP-binding (RHD3) family protein S.X. H.G.
0.45 65.2 Ta.2505.1.A1_at BJ261362 - - 2e-33 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) S.X. H.G.
0.44 64.5 Ta.2505.1.A1_x_at BJ261362 - - 2e-33 At5g53300 UBC10 (ubiquitin-conjugating enzyme 10) S.X. H.G.
0.43 62.2 Ta.30793.1.S1_x_at CK212652 - - 1e-4 At5g46030 unknown protein S.X. H.G.
0.41 59.6 Ta.28673.1.S1_at BJ286336 Vacuolar ATPase subunit F - 3e-15 At4g02620 vacuolar ATPase subunit F family protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.5 97.8 GSM314278 tissue type: anthers, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
4.7 97.1 GSM298091 Leaf tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
4.0 96.3 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7 95.8 GSM250908 Tc_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5 95.4 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
3.5 95.4 GSM314280 tissue type: anthers, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
3.4 95.2 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.4 95.2 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.1 94.5 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.7 93.3 GSM314279 tissue type: anthers, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 1029 Ta.2308.3.S1_at CA683060 - - 4e-3 At5g59140 SKP1 family protein C.G. S.X.
0.63 0 666 Ta.2308.1.S1_a_at BJ297332 - - 1e-7 At5g59140 SKP1 family protein C.G. S.X.
0.63 0 666 Ta.2308.1.S1_x_at BJ297332 - - 1e-7 At5g59140 SKP1 family protein C.G. S.X.
0.26 9e-54 210 Ta.2308.2.S1_at BJ263567 - - 8e-2 At5g59140 SKP1 family protein C.G. S.X.
0.03 3e-1 36 TaAffx.29034.1.A1_at CK209121 - - 1e-6 At3g07440 unknown protein C.G. S.X.
0.04 3e-1 36 Ta.30065.1.S1_x_at CK204385 - - 8e-2 At4g32030 unknown protein C.G. S.X.
0.04 3e-1 36 Ta.30065.1.S1_at CK204385 - - 8e-2 At4g32030 unknown protein C.G. S.X.
0.01 3e-1 36 Ta.13447.1.S1_at AF525086.1 GSK-like kinase - 2e-45 At5g26751 ATSK11 C.G. S.X.
0.03 1e+0 34 TaAffx.92461.1.A1_at BJ264981 - - 1e+0 At1g02710 glycine-rich protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 4e-3 42 Arabidopsis thaliana At5g59140 836032 SKP1 family protein F:protein binding;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFPO - - - C.G. S.X.
0.07 2e-2 40 Glycine max Gma.6848.1.S1_at CD402025 - - 2e-9 At5g59140 SKP1 family protein C.G. S.X.
0.55 2e-161 567 Hordeum vulgare Contig6814_at Contig6814 - - 7e-9 At5g59140 SKP1 family protein C.G. S.X.
0.39 3e-55 216 Oryza sativa Os11g0707700 AK064106.1 - Elongin C (Fragment) 2e-15 At5g59140 SKP1 family protein C.G. S.X.
0.13 2e-2 40 Populus trichocarpa PtpAffx.16151.1.A1_at DN487292 hypothetical protein - 3e-23 At5g59140 SKP1 family protein C.G. S.X.
0.12 6e-9 59 Vitis vinifera 1621023_at CB920048 hypothetical protein LOC100258618 - 8e-27 At5g59140 SKP1 family protein C.G. S.X.
0.33 2e-28 125 Zea mays Zm.8362.1.A1_at CK371486 elongin C - 2e-3 At5g59140 SKP1 family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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