CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.23042.1.S1_x_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 Ta.23042.1.S1_x_at BE517350 - - 1e-2 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) S.X. H.G.
0.80 92.2 Ta.3382.1.S1_at AB042627.1 - - 4e+0 At3g21460 electron carrier/ protein disulfide oxidoreductase S.X. H.G.
0.80 92.2 Ta.23822.1.S1_at AF123603.1 - - 6e-2 At2g36026 - S.X. H.G.
0.77 90.8 Ta.1362.1.S1_at AB042631.1 - - 1e-2 At5g25130 CYP71B12 S.X. H.G.
0.73 89.1 Ta.3381.1.S1_at AF123602.1 - - 9e-1 At4g31940 CYP82C4 S.X. H.G.
0.71 88.0 Ta.23042.2.S1_at CK214164 - - 5e+0 At4g26230 60S ribosomal protein L31 (RPL31B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
59.1 99.9 GSM314252 tissue type: germinating seed, coleoptile - rep2 GSE12508 Transcription patterns during wheat development
55.6 99.9 GSM314251 tissue type: germinating seed, coleoptile - rep1 GSE12508 Transcription patterns during wheat development
54.7 99.9 GSM314258 tissue type: germinating seed, embryo - rep2 GSE12508 Transcription patterns during wheat development
41.2 99.9 GSM314253 tissue type: germinating seed, coleoptile - rep3 GSE12508 Transcription patterns during wheat development
35.4 99.9 GSM314259 tissue type: germinating seed, embryo - rep3 GSE12508 Transcription patterns during wheat development
32.6 99.9 GSM314257 tissue type: germinating seed, embryo - rep1 GSE12508 Transcription patterns during wheat development
15.9 99.6 GSM314263 tissue type: seedling, crown - rep1 GSE12508 Transcription patterns during wheat development
15.8 99.6 GSM314265 tissue type: seedling, crown - rep3 GSE12508 Transcription patterns during wheat development
12.1 99.4 GSM314256 tissue type: germinating seed, root - rep3 GSE12508 Transcription patterns during wheat development
11.3 99.3 GSM314264 tissue type: seedling, crown - rep2 GSE12508 Transcription patterns during wheat development
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 0 712 Ta.23042.2.S1_at CK214164 - - 5e+0 At4g26230 60S ribosomal protein L31 (RPL31B) C.G. S.X.
0.69 0 642 Ta.25295.1.S1_at CD373447 - - 7e-4 At1g51990 O-methyltransferase family 2 protein C.G. S.X.
0.34 4e-42 173 Ta.336.1.S1_x_at AY226581.1 caffeic acid O-methyltransferase - 1e-8 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) C.G. S.X.
0.46 7e-41 169 Ta.336.2.S1_at BJ252644 Flavonoid O-methyltransferase - 5e-8 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) C.G. S.X.
0.24 2e-38 161 TaAffx.108314.1.S1_at BE586190 - - 8e-2 At2g37950 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.34 2e-38 161 Ta.27338.1.S1_at BT009359.1 O-methyltransferase 3 - 7e-1 At4g28260 unknown protein C.G. S.X.
0.25 2e-22 107 Ta.4350.1.A1_at CA644429 Flavonoid O-methyltransferase - 2e+1 At4g08867 unknown protein C.G. S.X.
0.24 5e-17 89 TaAffx.95750.1.S1_at CA648685 - - 7e+0 At1g51990 O-methyltransferase family 2 protein C.G. S.X.
0.17 5e-11 69 TaAffx.24336.1.S1_at BJ229068 - - 3e+0 At3g02910 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-2 42 Arabidopsis thaliana At5g54160 835504 ATOMT1 (O-METHYLTRANSFERASE 1) A caffeic acid/5-hydroxyferulic acid O-methyltransferase. Interacts with 14-4-3 proteins in yeast 2 hybrid assay. AtOMT1 (At5g54160) encodes a flavonol 3’-O-methyltransferase that is highly active towards quercetin and myricetin. The substrate specificity identifies the enzyme as flavonol 3’-methyltransferase which replaces the former annotation of the gene to encode a caffeic acid/5-hydroxyferulic acid O-methyltransferase - - - C.G. S.X.
0.02 2e-1 38 Glycine max PsAffx.psHA001iF12r_s_at PsAffx.psHA001iF12r - - 1e+0 At1g19150 LHCA6 C.G. S.X.
0.68 4e-139 494 Hordeum vulgare Contig6251_at Contig6251 - - 3e+0 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) C.G. S.X.
0.35 7e-24 113 Oryza sativa Os08g0157500 AK064768.1 - Caffeic acid 3-O-methyltransferase (EC 2.1.1.68)(S-adenosysl-L- methionine:caffeic acid3-O-methyltransferase) (COMT) (CAOMT) 2e-7 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) C.G. S.X.
0.02 4e+0 34 Populus trichocarpa PtpAffx.223617.1.S1_at pmrna41687 hypothetical protein - 3e+1 At3g58710 WRKY69 C.G. S.X.
0.04 1e-2 40 Vitis vinifera 1619450_s_at CF215109 hypothetical protein LOC100258977 - 6e-63 At5g54160 ATOMT1 (O-METHYLTRANSFERASE 1) C.G. S.X.
0.21 9e-23 107 Zea mays Zm.1502.1.A1_at CF637870 flavonoid O-methyltransferase - 2e+0 At3g09032 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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