CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.23012.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.71 88.0 Ta.23012.1.S1_at AJ610851 - - 7e-20 At1g20200 EMB2719 (EMBRYO DEFECTIVE 2719) S.X. H.G.
0.83 93.4 Ta.14707.1.S1_at CD870546 Eukaryotic initiation factor 4E p26 subunit - 1e-7 At1g29550 eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putative S.X. H.G.
0.80 92.2 Ta.14415.1.S1_at BJ310478 20S proteasome beta 7 subunit - 4e-3 At1g56450 PBG1 S.X. H.G.
0.71 88.0 Ta.21374.1.S1_x_at CD873343 - - 5e-38 At5g58290 RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3) S.X. H.G.
0.61 82.0 Ta.1866.3.S1_at CA662433 - - 4e-3 At1g12920 ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) S.X. H.G.
0.46 66.8 Ta.14393.1.S1_at CK156758 - - 8e-35 At2g27020 PAG1 S.X. H.G.
0.40 58.4 Ta.2207.1.S1_at CK200975 - - 2e-56 At5g05780 RPN8A (RP NON-ATPASE SUBUNIT 8A) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.1 96.4 GSM314260 tissue type: seedling, root - rep1 GSE12508 Transcription patterns during wheat development
3.2 94.8 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
3.0 94.3 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
2.3 91.5 GSM298062 Crown tissue of Harnesk at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
2.2 91.0 GSM314259 tissue type: germinating seed, embryo - rep3 GSE12508 Transcription patterns during wheat development
2.2 91.0 GSM298060 Crown tissue of Harnesk at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
2.2 91.0 GSM298084 Crown tissue of Solstice at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
2.1 90.3 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
2.1 90.3 GSM298083 Crown tissue of Solstice at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
2.1 90.3 GSM298059 Crown tissue of Harnesk at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.37 3e-130 466 Ta.12270.1.S1_at CK169176 - - 2e-6 At1g20200 EMB2719 (EMBRYO DEFECTIVE 2719) C.G. S.X.
0.02 2e-5 52 TaAffx.97429.1.S1_at AJ609876 - - 3e+0 At5g24190 - C.G. S.X.
0.02 2e-5 52 TaAffx.90564.1.S1_at AJ614677 - - 6e-47 At3g15060 AtRABA1g (Arabidopsis Rab GTPase homolog A1g) C.G. S.X.
0.02 2e-5 52 TaAffx.66882.1.A1_at AJ614600 - - 1e+0 At3g29030 EXPA5 (EXPANSIN A5) C.G. S.X.
0.02 2e-5 52 Ta.7849.1.A1_at AJ611378 - - 5e+0 At2g17770 ATBZIP27 C.G. S.X.
0.02 2e-5 52 Ta.7830.1.S1_at AJ613758 - - 2e+1 At5g25560 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.02 2e-5 52 Ta.7301.1.S1_at AJ615427 - - 3e-2 At3g20750 zinc finger (GATA type) family protein C.G. S.X.
0.02 2e-5 52 Ta.6835.1.S1_at AJ610330 - - 5e-1 At3g06140 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 2e-5 52 Ta.6661.1.S1_a_at AJ613687 - - 2e-10 At1g50920 GTP-binding protein-related C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.27 7e-20 99 Arabidopsis thaliana At1g20200 838609 EMB2719 (EMBRYO DEFECTIVE 2719) F:enzyme regulator activity;P:embryonic development ending in seed dormancy, ubiquitin-dependent protein catabolic process;C:plasma membrane, proteasome regulatory particle, lid subcomplex;MFPO - - - C.G. S.X.
0.29 2e-27 125 Glycine max Gma.5792.1.S1_at BG649960 - - 3e-25 At1g20200 EMB2719 (EMBRYO DEFECTIVE 2719) C.G. S.X.
0.84 0 2242 Hordeum vulgare Contig6657_at Contig6657 - - 3e-25 At1g20200 EMB2719 (EMBRYO DEFECTIVE 2719) C.G. S.X.
0.63 0 1158 Oryza sativa Os08g0550100 AK058374.1 - Proteasome component region PCI domain containingprotein 3e-28 At1g20200 EMB2719 (EMBRYO DEFECTIVE 2719) C.G. S.X.
0.29 7e-24 113 Populus trichocarpa PtpAffx.163275.1.A1_at CV239659 hypothetical protein - 1e-21 At1g20200 EMB2719 (EMBRYO DEFECTIVE 2719) C.G. S.X.
0.39 1e-65 250 Vitis vinifera 1613705_at CF517167 hypothetical protein LOC100264130 - 4e-27 At1g20200 EMB2719 (EMBRYO DEFECTIVE 2719) C.G. S.X.
0.58 0 874 Zea mays Zm.701.1.A1_a_at CA403934 26S proteasome non-ATPase regulatory subunit 3 /// 26S proteasome non-ATPase regulatory subunit 3 - 2e-8 At1g75990 26S proteasome regulatory subunit S3, putative (RPN3) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage