Gene omics information

Query gene ID	Ta.2278.3.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.2278.3.S1_x_at	CD490414	-	-	6e+0	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	S.X.	H.G.	Please select
0.83	93.4	Ta.2278.2.S1_x_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	S.X.	H.G.	Please select
0.80	92.2	Ta.2278.1.S1_x_at	CK199734	-	-	3e+0	At2g43590	chitinase, putative	S.X.	H.G.	Please select
0.80	92.2	Ta.2278.2.S1_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	S.X.	H.G.	Please select
0.80	92.2	Ta.2278.2.S1_a_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	S.X.	H.G.	Please select
0.31	42.7	Ta.30921.1.S1_x_at	CN012317	-	-	2e-4	At1g09400	12-oxophytodienoate reductase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
71.7	100.0	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
67.3	100.0	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
50.8	99.9	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
20.9	99.7	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
14.5	99.5	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
12.2	99.4	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
10.1	99.2	GSM143504	Thatcher_Lr34 (resistant), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
10.0	99.1	GSM143506	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
8.7	98.9	GSM143505	Thatcher_Lr34 (resistant), rust inoculated distal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
8.3	98.8	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.64	0	989	Ta.2278.2.S1_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	C.G.	S.X.	Please select
0.64	0	989	Ta.2278.2.S1_a_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	C.G.	S.X.	Please select
0.64	0	989	Ta.2278.2.S1_x_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	C.G.	S.X.	Please select
0.58	6e-179	626	Ta.2278.1.S1_x_at	CK199734	-	-	3e+0	At2g43590	chitinase, putative	C.G.	S.X.	Please select
0.52	1e-84	313	Ta.221.1.S1_at	AF112963.1	chitinase II precursor	-	5e-1	At1g54640	F-box family protein-related	C.G.	S.X.	Please select
0.44	8e-49	194	Ta.224.1.S1_at	AF112966.1	chitinase IV precursor	-	1e-1	At3g54420	ATEP3	C.G.	S.X.	Please select
0.19	1e-13	77	Ta.15405.1.S1_at	CA484292	-	-	4e+0	At2g17975	zinc finger (Ran-binding) family protein	C.G.	S.X.	Please select
0.27	2e-12	73	TaAffx.1236.1.A1_at	CK209022	-	-	5e+0	At2g35370	GDCH	C.G.	S.X.	Please select
0.06	4e-4	46	TaAffx.133698.1.A1_s_at	BJ296326	-	-	1e+0	At2g43570	chitinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e+0	32	Arabidopsis thaliana	At3g12500	820429	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	PsAffx.CL72Contig2_at	PsAffx.CL72Contig2	-	-	3e-1	At2g25190	unknown protein	C.G.	S.X.	Please select
0.72	0	680	Hordeum vulgare	Contig4324_s_at	Contig4324	-	-	8e+0	At4g26060	unknown protein	C.G.	S.X.	Please select
0.28	1e-36	155	Oryza sativa	Os04g0494100	AB096140.1	-	Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A)	1e-1	At2g43590	chitinase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e-2	40	Populus trichocarpa	PtpAffx.2522.3.A1_at	CV269821	hypothetical protein	-	6e-1	At3g18160	peroxin-3 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-3	40	Vitis vinifera	1616064_at	CF205270.1	-	-	1e-4	At3g47540	chitinase, putative	C.G.	S.X.	Please select
0.20	2e-19	95	Zea mays	Zm.1595.1.S1_at	CD967190	endochitinase A	-	6e-1	At3g54420	ATEP3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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