Gene omics information

Query gene ID	Ta.2270.3.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.46	66.8	Ta.2270.3.S1_at	CA610189	-	-	3e-1	At2g24480	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.53	74.9	TaAffx.18131.1.S1_at	CA606191	-	-	4e-2	At1g51620	protein kinase family protein	S.X.	H.G.	Please select
0.50	72.4	Ta.458.1.S1_at	BF201579	-	-	1e-11	At1g32360	zinc finger (CCCH-type) family protein	S.X.	H.G.	Please select
0.44	64.5	Ta.10883.1.S1_x_at	CK193711	-	-	2e-1	At5g14000	anac084 (Arabidopsis NAC domain containing protein 84)	S.X.	H.G.	Please select
0.38	54.7	Ta.9523.1.S1_at	CK161553	-	-	4e+0	At3g26050	-	S.X.	H.G.	Please select
0.32	44.4	TaAffx.24357.1.S1_at	BJ310144	-	-	1e-20	At5g61240	protein binding	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
11.0	99.3	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
6.1	98.1	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.6	97.8	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
5.2	97.5	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.0	96.3	GSM138180	genotype A35 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.8	96.0	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	989	Ta.2270.3.S1_a_at	CA610189	-	-	3e-1	At2g24480	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.18	1e-86	319	Ta.2270.1.S1_at	BQ168154	-	-	1e+0	At1g14380	IQD28 (IQ67 DOMAIN PROTEIN 28)	C.G.	S.X.	Please select
0.04	5e-3	42	Ta.25557.1.A1_at	CK205677	-	-	2e+0	At1g66060	unknown protein	C.G.	S.X.	Please select
0.04	7e-2	38	TaAffx.24851.1.S1_at	CA711013	-	-	2e-1	At1g64500	glutaredoxin family protein	C.G.	S.X.	Please select
0.04	3e-1	36	TaAffx.58606.1.S1_at	CA618121	-	-	3e-1	At1g75030	ATLP-3	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.57993.1.S1_at	CA623238	-	-	4e+0	At5g65050	AGL31 (AGAMOUS LIKE MADS-BOX PROTEIN 31)	C.G.	S.X.	Please select
0.01	4e+0	32	TaAffx.20818.1.S1_at	CD891353	-	-	3e-3	At1g01830	armadillo/beta-catenin repeat family protein	C.G.	S.X.	Please select
0.04	4e+0	32	TaAffx.112343.1.S1_at	CA624753	-	-	4e+0	At4g04423	endo-1,3(4)-beta-glucanase	C.G.	S.X.	Please select
0.03	4e+0	32	Ta.5707.1.S1_at	BJ296628	-	-	3e-1	At5g07600	oleosin / glycine-rich protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e-1	36	Arabidopsis thaliana	At2g24480	816984	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	2e+0	34	Glycine max	HgAffx.16394.1.S1_at	CB279962	-	-	9e-1	At5g41810	unknown protein	C.G.	S.X.	Please select
0.19	4e-85	313	Hordeum vulgare	Contig8292_at	Contig8292	-	-	3e-1	At1g49290	unknown protein	C.G.	S.X.	Please select
0.10	4e-17	89	Oryza sativa	Os05g0535900	AK101555.1	-	IQ calmodulin-binding region domain containingprotein	1e+0	At5g27690	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-3	44	Populus trichocarpa	PtpAffx.210515.1.S1_at	pmrna20623	hypothetical protein	-	1e-5	At1g74690	IQD31 (IQ-domain 31)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+0	32	Vitis vinifera	1619656_at	CB347776	hypothetical protein LOC100248396	-	2e-1	At1g25300	octicosapeptide/Phox/Bem1p (PB1) domain-containing protein	C.G.	S.X.	Please select
0.06	9e-15	79	Zea mays	Zm.15898.1.A1_at	CD436482	calmodulin binding protein	-	1e-3	At1g74690	IQD31 (IQ-domain 31)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage