Gene omics information

Query gene ID	Ta.22398.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.43	62.2	Ta.22398.1.S1_at	CA597140	-	-	8e+0	At5g20100	unknown protein	S.X.	H.G.	Please select
0.71	88.0	Ta.9006.1.S1_at	BQ162762	-	-	7e+0	At5g15840	CO (CONSTANS)	S.X.	H.G.	Please select
0.50	72.4	TaAffx.76554.1.A1_at	BJ307578	-	-	1e+0	At5g54320	unknown protein	S.X.	H.G.	Please select
0.50	72.4	Ta.11311.1.A1_at	BQ169821	-	-	5e+0	At4g00940	Dof-type zinc finger domain-containing protein	S.X.	H.G.	Please select
0.38	54.7	TaAffx.12303.1.S1_at	CD938363	-	-	1e-1	At4g37240	unknown protein	S.X.	H.G.	Please select
0.38	54.7	Ta.5909.3.A1_x_at	BJ298528	-	-	7e+0	At4g27350	unknown protein	S.X.	H.G.	Please select
0.32	44.4	Ta.27940.1.A1_s_at	BQ169626	-	-	1e+0	At1g01380	ETC1 (ENHANCER OF TRY AND CPC 1)	S.X.	H.G.	Please select
0.22	27.1	TaAffx.29625.1.S1_at	CA638741	-	-	8e+0	At4g24026	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.0	98.0	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.8	97.2	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.1	96.4	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.3	95.0	GSM314269	tissue type: immature inflorescence - rep1	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM139921	Anther diplotene-anaphaseI rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2	94.8	GSM324486	Si- B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	5e-4	46	TaAffx.107199.1.S1_at	CA704477	-	-	3e+0	At5g57980	RPB5C (RNA POLYMERASE II FIFTH LARGEST SUBUNIT, C)	C.G.	S.X.	Please select
0.03	1e-1	38	TaAffx.103008.1.S1_at	CA693868	-	-	4e+0	At5g40550	unknown protein	C.G.	S.X.	Please select
0.02	1e-1	38	Ta.24934.3.S1_at	CA695230	-	-	9e+0	At5g20810	auxin-responsive protein, putative / small auxin up RNA (SAUR_B)	C.G.	S.X.	Please select
0.02	2e+0	34	TaAffx.97077.1.A1_at	CD490377	-	-	6e+0	At5g20100	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	TaAffx.91673.1.A1_at	BJ307597	-	-	4e+0	At5g10946	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	TaAffx.85269.1.S1_at	CA624173	-	-	7e-2	At1g19310	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	2e+0	34	Ta.5122.1.S1_at	CD929100	-	-	2e-2	At5g19400	SMG7	C.G.	S.X.	Please select
0.01	2e+0	34	Ta.2928.1.S1_at	BJ306562	-	-	1e-18	At1g80670	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select
0.03	8e+0	32	TaAffx.84884.1.S1_at	CA627487	-	-	2e+0	At5g38770	AtGDU7 (Arabidopsis thaliana GLUTAMINE DUMPER 7)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e+0	32	Arabidopsis thaliana	At5g20100	832132	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-2	40	Glycine max	PsAffx.CL2438Contig1_at	PsAffx.CL2438Contig1	-	-	3e-1	At5g28640	AN3 (ANGUSTIFOLIA 3)	C.G.	S.X.	Please select
0.09	1e-27	123	Hordeum vulgare	MitoContig12_at	MitoContig12	-	-	1e-3	At2g07715	ribosomal protein L2, putative	C.G.	S.X.	Please select
0.02	4e+0	34	Oryza sativa	Os01g0675100	AF203879.1	-	Peroxiredoxin	4e-1	At1g65970	TPX2 (thioredoxin-dependent peroxidase 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	3e+0	34	Populus trichocarpa	PtpAffx.9773.1.A1_at	DN490927	-	-	4e+0	At5g67620	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.08	7e-19	93	Vitis vinifera	1621423_at	CB002386	-	-	5e+0	At3g21140	FMN binding	C.G.	S.X.	Please select
0.03	8e-1	34	Zea mays	Zm.12508.1.S1_at	AW055663	hypothetical protein LOC100279964	-	9e-1	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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