Gene omics information

Query gene ID	Ta.2207.2.S1_a_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	93.4	Ta.2207.2.S1_a_at	CA612248	-	-	5e-25	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	S.X.	H.G.	Please select
0.67	86.3	Ta.7274.3.S1_a_at	AJ612375	-	-	1e-3	At1g79650	RAD23	S.X.	H.G.	Please select
0.60	81.0	TaAffx.77390.1.S1_at	CD893386	histone deacetylase	-	1e-19	At5g63110	HDA6 (HISTONE DEACETYLASE 6)	S.X.	H.G.	Please select
0.50	72.4	Ta.7506.2.S1_a_at	BJ267303	-	-	5e-15	At1g27650	ATU2AF35A	S.X.	H.G.	Please select
0.44	64.5	TaAffx.87003.1.S1_s_at	CA597427	-	-	4e-3	At4g19150	ankyrin repeat family protein	S.X.	H.G.	Please select
0.44	64.5	Ta.30799.3.S1_a_at	CA720672	-	-	6e-2	At5g54580	RNA recognition motif (RRM)-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.2	98.1	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.8	97.9	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.4	97.7	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
5.0	97.4	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.5	96.9	GSM298084	Crown tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.4	96.8	GSM298083	Crown tissue of Solstice at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.3	96.7	GSM298087	Crown tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM298063	Crown tissue of Harnesk at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.45	0	831	Ta.2207.1.S1_at	CK200975	-	-	2e-56	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	C.G.	S.X.	Please select
0.52	1e-121	436	TaAffx.85687.1.S1_at	CA620531	-	-	1e-15	At3g11270	MEE34 (maternal effect embryo arrest 34)	C.G.	S.X.	Please select
0.02	9e-2	38	Ta.7497.1.S1_at	CD453021	-	-	2e+0	At1g69295	PDCB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4)	C.G.	S.X.	Please select
0.02	9e-2	38	Ta.21166.1.S1_at	CD492089	-	-	8e-4	At4g39540	shikimate kinase family protein	C.G.	S.X.	Please select
0.03	4e-1	36	TaAffx.7889.1.S1_at	CA645332	-	-	2e+1	At4g18372	small nuclear ribonucleoprotein-related / snRNP-related	C.G.	S.X.	Please select
0.02	4e-1	36	Ta.9108.1.S1_at	BQ171502	-	-	1e-4	At2g18400	ribosomal protein L6 family protein	C.G.	S.X.	Please select
0.02	4e-1	36	Ta.7085.1.S1_at	CD894309	-	-	8e-7	At1g76010	nucleic acid binding	C.G.	S.X.	Please select
0.02	4e-1	36	Ta.5230.2.S1_at	BJ263535	-	-	2e+0	At4g28870	unknown protein	C.G.	S.X.	Please select
0.02	4e-1	36	Ta.5091.3.S1_x_at	CK197746	-	-	1e-30	At5g18170	GDH1 (GLUTAMATE DEHYDROGENASE 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.34	5e-25	115	Arabidopsis thaliana	At5g05780	830463	RPN8A (RP NON-ATPASE SUBUNIT 8A)	Encodes a putative 26S proteasome subunit RPN8a. The function of RPN8a and other 26S subunits may be required for specifying leaf adaxial identity.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.37	2e-31	137	Glycine max	GmaAffx.65487.1.S1_at	AW101035	-	-	4e-28	At3g11270	MEE34 (maternal effect embryo arrest 34)	C.G.	S.X.	Please select
0.49	0	821	Hordeum vulgare	Contig3557_at	Contig3557	-	-	3e-68	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	C.G.	S.X.	Please select
0.41	6e-177	621	Oryza sativa	Os04g0661900	AK103551.1	-	-	8e-44	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	1e-20	101	Populus trichocarpa	Ptp.1315.1.S1_at	CV267551	hypothetical protein	-	2e-108	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	1e-19	95	Vitis vinifera	1612915_at	CF212348	hypothetical protein LOC100247677	-	8e-115	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	C.G.	S.X.	Please select
0.40	1e-146	517	Zea mays	Zm.477.2.A1_at	AI737865	hypothetical protein LOC100274928	-	2e-75	At5g05780	RPN8A (RP NON-ATPASE SUBUNIT 8A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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