CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.2176.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.59 79.8 Ta.2176.1.S1_at CK206562 - - 1e-25 At4g26300 emb1027 (embryo defective 1027) S.X. H.G.
0.67 86.3 TaAffx.95068.1.S1_at BJ231602 - - 2e+1 At5g58005 unknown protein S.X. H.G.
0.50 72.4 Ta.3155.1.S1_at CK169154 - - 2e+0 At5g27390 - S.X. H.G.
0.40 58.4 Ta.21411.1.S1_at CK205494 - - 8e-9 At4g33650 DRP3A (DYNAMIN-RELATED PROTEIN 3A) S.X. H.G.
0.29 39.2 Ta.6268.1.A1_at BJ306810 - - 8e-2 At4g32551 LUG (LEUNIG) S.X. H.G.
0.26 33.6 Ta.2803.1.S1_at BJ322551 - - 1e+0 At5g46030 unknown protein S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.3 96.7 GSM298088 Crown tissue of Solstice at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.3 96.7 GSM298062 Crown tissue of Harnesk at 5 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.2 96.6 GSM298087 Crown tissue of Solstice at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.0 96.3 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.0 96.3 GSM298063 Crown tissue of Harnesk at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
4.0 96.3 GSM298064 Crown tissue of Harnesk at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
3.9 96.1 GSM298083 Crown tissue of Solstice at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.9 96.1 GSM298075 Crown tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.9 96.1 GSM298073 Crown tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.8 96.0 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 1e-28 129 Ta.15829.1.S1_at CA497842 - - 1e+0 At1g66530 arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative C.G. S.X.
0.04 3e-10 67 TaAffx.43067.1.S1_at CD492037 - - 1e+0 At1g36732 CPuORF19 (Conserved peptide upstream open reading frame 19) C.G. S.X.
0.06 2e-8 61 TaAffx.42550.1.S1_at AJ613736 - - 4e+0 At2g20590 reticulon family protein C.G. S.X.
0.01 3e-4 48 TaAffx.110994.1.S1_s_at CA604139 - - 1e+1 At1g11700 unknown protein C.G. S.X.
0.02 3e-4 48 Ta.28445.1.S1_at CF133117 - - 8e+0 At2g39630 glycosyl transferase family 2 protein C.G. S.X.
0.02 3e-4 48 Ta.28445.1.S1_x_at CF133117 - - 8e+0 At2g39630 glycosyl transferase family 2 protein C.G. S.X.
0.02 3e-4 48 Ta.28445.1.S1_s_at CF133117 - - 8e+0 At2g39630 glycosyl transferase family 2 protein C.G. S.X.
0.01 3e-4 48 Ta.27020.1.S1_at CD891344 - - 3e+0 At3g63040 unknown protein C.G. S.X.
0.01 3e-4 48 Ta.20537.1.S1_x_at CA648311 - - 5e-4 At3g53340 NF-YB10 (NUCLEAR FACTOR Y, SUBUNIT B10) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 1e-25 119 Arabidopsis thaliana At4g26300 828736 emb1027 (embryo defective 1027) F:nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, arginyl-tRNA aminoacylation;C:mitochondrion, chloroplast;OBMAFPV - - - C.G. S.X.
0.11 5e-10 67 Glycine max Gma.10893.1.S1_at BE659457 arginyl-tRNA synthetase - 7e-20 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.68 0 2183 Hordeum vulgare Contig9377_at Contig9377 - - 4e-27 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.65 0 1072 Oryza sativa Os05g0163000 AK066161.1 - Arginyl-tRNA synthetase, class Ic family protein 2e-20 At4g26300 emb1027 (embryo defective 1027) C.G. S.X.
0.07 5e-13 77 Populus trichocarpa PtpAffx.2294.1.S1_at CN524740 hypothetical protein - 4e-48 At1g66530 arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative C.G. S.X.
0.01 9e-2 38 Vitis vinifera 1609598_at BQ800096 hypothetical protein LOC100245060 - 2e-11 At3g07630 ADT2 (arogenate dehydratase 2) C.G. S.X.
0.36 5e-146 517 Zea mays Zm.7543.1.A1_at CD997722 hypothetical protein LOC100192002 - 4e-6 At1g66530 arginyl-tRNA synthetase, putative / arginine--tRNA ligase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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