Gene omics information

Query gene ID	Ta.21547.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	79.8	Ta.21547.1.S1_at	CK165976	-	-	2e-3	At1g14980	CPN10 (CHAPERONIN 10)	S.X.	H.G.	Please select
0.73	89.1	Ta.28199.1.S1_at	BJ297475	-	-	2e-4	At1g18800	NRP2 (NAP1-RELATED PROTEIN 2)	S.X.	H.G.	Please select
0.63	83.1	Ta.21547.1.S1_x_at	CK165976	-	-	2e-3	At1g14980	CPN10 (CHAPERONIN 10)	S.X.	H.G.	Please select
0.30	40.9	Ta.6074.1.S1_at	BJ214722	-	-	6e-28	At3g05560	60S ribosomal protein L22-2 (RPL22B)	S.X.	H.G.	Please select
0.25	32.1	Ta.12870.1.S1_at	BJ322687	-	-	8e-52	At1g04480	60S ribosomal protein L23 (RPL23A)	S.X.	H.G.	Please select
0.25	32.1	Ta.2044.1.S1_x_at	CN009661	-	-	4e-38	At3g60245	60S ribosomal protein L37a (RPL37aC)	S.X.	H.G.	Please select
0.22	27.1	Ta.14564.1.S1_at	BJ238984	-	-	1e-5	At1g48830	40S ribosomal protein S7 (RPS7A)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.1	96.4	GSM139915	Anther pre-meiosis rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.2	94.8	GSM138171	genotype C31 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.7	93.3	GSM138183	genotype A10 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.7	93.3	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.4	92.0	GSM138181	genotype A35 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.3	91.5	GSM138209	genotype H23 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.2	91.0	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
2.2	91.0	GSM138179	genotype A88 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.2	91.0	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
2.2	91.0	GSM138207	genotype B11 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.71	0	1021	Ta.21547.1.S1_x_at	CK165976	-	-	2e-3	At1g14980	CPN10 (CHAPERONIN 10)	C.G.	S.X.	Please select
0.38	6e-93	341	TaAffx.24845.1.S1_at	CA711062	-	-	8e-1	At3g29780	RALFL27 (ralf-like 27)	C.G.	S.X.	Please select
0.40	7e-62	238	TaAffx.105736.1.S1_at	CA730545	-	-	3e+0	At2g32890	RALFL17 (RALF-LIKE 17)	C.G.	S.X.	Please select
0.10	1e-20	101	Ta.13043.1.S1_x_at	CA617125	-	-	1e-3	At1g14980	CPN10 (CHAPERONIN 10)	C.G.	S.X.	Please select
0.03	9e-12	71	Ta.13425.1.S1_at	CK211578	-	-	2e-29	At4g08790	nitrilase, putative	C.G.	S.X.	Please select
0.05	1e-10	67	Ta.30216.2.S1_x_at	BG314505	-	-	5e+0	At3g15640	cytochrome c oxidase family protein	C.G.	S.X.	Please select
0.03	1e-10	67	Ta.14580.1.S1_at	CK199688	-	-	3e-3	At3g21770	peroxidase 30 (PER30) (P30) (PRXR9)	C.G.	S.X.	Please select
0.04	5e-10	65	Ta.5610.1.S1_at	AY151390.1	hemoglobin Hb1	-	2e+0	At3g06360	AGP27	C.G.	S.X.	Please select
0.03	2e-9	63	Ta.8188.1.S1_at	CK200319	-	-	1e-11	At4g33880	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	2e-3	44	Arabidopsis thaliana	At1g14980	838063	CPN10 (CHAPERONIN 10)	Encodes mitochondrial-localized chaperonin 10 that complements the E.coli groES mutant. Its mRNA is upregulated in response to heat shock treatment and is expressed uniformly in various organs.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	34	Glycine max	PsAffx.CL1875Contig1_at	PsAffx.CL1875Contig1	-	-	1e+0	At5g45880	pollen Ole e 1 allergen and extensin family protein	C.G.	S.X.	Please select
0.64	0	656	Hordeum vulgare	Contig4654_at	Contig4654	-	-	2e-2	At3g57930	unknown protein	C.G.	S.X.	Please select
0.31	1e-67	258	Oryza sativa	Os07g0641700	AK122129.1	-	10 kDa chaperonin (Protein CPN10) (Protein groES)	8e-2	At3g22070	proline-rich family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+1	32	Populus trichocarpa	PtpAffx.90854.1.A1_at	CK087791	hypothetical protein	-	2e+0	At4g07740	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	2e+0	32	Vitis vinifera	1622590_at	CD800779	-	-	2e-1	At5g52130	unknown protein	C.G.	S.X.	Please select
0.25	4e-52	204	Zea mays	Zm.3775.1.A1_at	AY103856.1	chaperonin	-	3e-5	At1g14980	CPN10 (CHAPERONIN 10)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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