CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.20317.1.S1_x_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 72.4 Ta.20317.1.S1_x_at CA678146 - - 4e+0 At5g59850 40S ribosomal protein S15A (RPS15aF) S.X. H.G.
0.44 64.5 TaAffx.121291.1.S1_at BG905480 - - 3e+0 At2g10340 unknown protein S.X. H.G.
0.44 64.5 Ta.6666.2.S1_a_at CA640317 - - 5e-12 At3g49420 Got1-like family protein S.X. H.G.
0.25 32.1 Ta.30411.1.S1_at CK209297 - - 5e+0 At5g62280 unknown protein S.X. H.G.
0.24 30.3 TaAffx.78517.1.S1_at CA731451 - - 4e+0 At2g25720 unknown protein S.X. H.G.
0.21 25.5 TaAffx.131315.1.S1_at BJ278064 - - 2e-5 At4g09810 transporter-related S.X. H.G.
0.20 24.0 Ta.4119.1.S1_at BJ264170 - - 4e+0 At3g04945 LCR18 (Low-molecular-weight cysteine-rich 18) S.X. H.G.
0.15 17.1 TaAffx.31313.1.S1_at CA617546 - - 1e+1 At3g52561 unknown protein S.X. H.G.
0.07 8.6 Ta.8613.1.A1_at BQ162128 - - 1e+0 At2g35700 ERF38 (ERF FAMILY PROTEIN 38) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.8 98.7 GSM298092 Crown tissue of Solstice at 3 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
7.3 98.6 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.8 98.4 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.5 98.3 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9 98.0 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.1 97.5 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.7 97.1 GSM143526 Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.2 96.6 GSM143525 Thatcher_Lr34 (susceptible), mock inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.2 96.6 GSM143509 Thatcher_Lr34 (resistant), mock inoculated basal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.0 96.3 GSM143513 Thatcher_Lr34 (resistant), mock inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.93 0 890 Ta.20317.1.S1_a_at CA678146 - - 4e+0 At5g59850 40S ribosomal protein S15A (RPS15aF) C.G. S.X.
0.45 2e-97 355 Ta.20317.2.S1_x_at BJ232238 - - 7e-2 At2g27220 BLH5 (BELL1-like homeodomain 5) C.G. S.X.
0.03 3e-1 36 Ta.16211.1.S1_at CA602686 - - 2e+0 At2g40220 ABI4 (ABA INSENSITIVE 4) C.G. S.X.
0.02 3e-1 36 Ta.13156.1.S1_at BQ171819 - - 8e-1 At4g10290 - C.G. S.X.
0.03 4e+0 32 TaAffx.85565.1.S1_at CA621671 - - 2e-8 At2g04410 - C.G. S.X.
0.03 4e+0 32 TaAffx.81549.1.S1_at CA684692 - - 9e-1 At5g47310 unknown protein C.G. S.X.
0.03 4e+0 32 TaAffx.57853.1.S1_at CA624528 - - 4e-9 At2g44350 ATCS C.G. S.X.
0.03 4e+0 32 TaAffx.37156.1.S1_at BJ291335 - - 4e+0 At4g14010 RALFL32 (ralf-like 32) C.G. S.X.
0.03 4e+0 32 TaAffx.23822.1.S1_at CA729877 - - 4e+0 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e+0 32 Arabidopsis thaliana At5g59850 836107 40S ribosomal protein S15A (RPS15aF) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cell wall, membrane;BOMAPF - - - C.G. S.X.
0.02 6e+0 32 Glycine max PsAffx.C51000045_at PsAffx.C51000045 - - 2e+0 At4g15000 60S ribosomal protein L27 (RPL27C) C.G. S.X.
0.04 8e-3 40 Hordeum vulgare Contig15152_at Contig15152 - - 3e-1 At3g11820 SYP121 (SYNTAXIN OF PLANTS 121) C.G. S.X.
0.04 8e+0 32 Oryza sativa Os08g0154700 CF324539 - Small nuclear ribonucleoprotein (Sm protein)family protein 9e-24 At1g03330 small nuclear ribonucleoprotein D, putative / snRNP core SM-like protein, putative / U6 snRNA-associated Sm-like protein, putative C.G. S.X.
0.03 6e+0 32 Populus trichocarpa PtpAffx.220479.1.S1_at pmrna36872 - - 2e+0 At1g56530 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1608164_at CD008061 hypothetical protein LOC100261109 - 3e-4 At5g12020 HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN) C.G. S.X.
0.04 4e-1 34 Zea mays ZmAffx.180.1.A1_at AI668329 - - 8e-1 At1g17235 RTFL11 (ROTUNDIFOLIA LIKE 11) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage