CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.1984.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.92 98.5 Ta.1984.1.S1_at BG604569 - - 5e-32 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) S.X. H.G.
0.39 56.1 Ta.485.1.A1_at CD454354 - - 5e-1 At2g42250 CYP712A1 S.X. H.G.
0.34 48.1 Ta.30674.1.S1_at BQ620409 - - 1e-5 At2g22420 peroxidase 17 (PER17) (P17) S.X. H.G.
0.31 42.7 Ta.17059.1.S1_at BQ172322 - - 5e-8 At3g55760 unknown protein S.X. H.G.
0.31 42.7 TaAffx.65369.1.S1_at BJ255135 - - 5e-1 At5g17230 phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferase S.X. H.G.
0.29 39.2 Ta.19139.1.A1_at CA647789 - - 2e+1 At5g12323 unknown protein S.X. H.G.
0.28 39.2 Ta.23109.1.S1_at CA732234 - - 4e-4 At1g70190 ribosomal protein L12 family protein S.X. H.G.
0.26 33.6 Ta.23182.1.S1_at CA624329 - - 8e-1 At5g23280 TCP family transcription factor, putative S.X. H.G.
0.26 33.6 TaAffx.122865.1.S1_at CA610671 - - 3e-4 At4g26860 pyridoxal phosphate binding S.X. H.G.
0.24 30.3 Ta.10473.3.S1_a_at CA621550 - - 2e-11 At3g17040 HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
49.6 99.9 GSM324489 Si- B+ rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
42.0 99.9 GSM324488 Si- B+ rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
23.7 99.8 GSM324491 Si+ B- rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
10.7 99.2 GSM324490 Si+ B- rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.7 97.9 GSM314272 tissue type: floral bracts, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
5.2 97.5 GSM324484 Si- B- rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
5.0 97.4 GSM250893 TcLr34_3dpi_mock_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8 97.2 GSM246390 SB62_Stem_ rep1_at anthesis GSE9767 Genotypic differences in water soluble carbohydrate metabolism in stem
3.7 95.8 GSM324487 Si- B+ rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.4 95.2 GSM143516 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.44 2e-111 402 Ta.24558.1.A1_at CA663424 - - 1e+0 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) C.G. S.X.
0.06 4e-11 69 Ta.8599.1.A1_at BQ162109 - - 2e-11 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) C.G. S.X.
0.02 6e-1 36 Ta.6575.3.S1_s_at BJ256867 - - 3e-1 At1g19980 cytomatrix protein-related C.G. S.X.
0.02 6e-1 36 Ta.6575.3.S1_at BJ256867 - - 3e-1 At1g19980 cytomatrix protein-related C.G. S.X.
0.02 6e-1 36 Ta.4819.1.S1_at BJ267409 - - 6e-1 At5g50030 invertase/pectin methylesterase inhibitor family protein C.G. S.X.
0.02 6e-1 36 Ta.12259.1.A1_at BQ171964 - - 1e+1 At5g02640 unknown protein C.G. S.X.
0.02 2e+0 34 TaAffx.9630.1.S1_at CA593264 - - 4e+0 At2g10602 unknown protein C.G. S.X.
0.02 2e+0 34 TaAffx.49372.1.S1_at CD490827 - - 5e+0 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein C.G. S.X.
0.02 2e+0 34 TaAffx.37982.1.S1_at BJ256379 - - 4e+0 At4g28150 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 5e-32 139 Arabidopsis thaliana At4g16370 827332 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) Encodes an oligopeptide transporter involved in metal homeostasis. - - - C.G. S.X.
0.02 5e-2 40 Glycine max PsAffx.C6000013_at PsAffx.C6000013 - - 2e+0 At2g36410 unknown protein C.G. S.X.
0.63 0 872 Hordeum vulgare Contig14945_at Contig14945 - - 8e-36 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) C.G. S.X.
0.35 0 928 Oryza sativa Os.4978.1.S2_at - - - 0 C.G. S.X.
0.15 2e-7 57 Populus trichocarpa PtpAffx.21103.1.S1_at CV262518 oligopeptide transporter OPT family - 7e-19 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) C.G. S.X.
0.02 4e-5 48 Vitis vinifera 1613916_at CF404702 hypothetical protein LOC100250922 - 1e-24 At5g64410 OPT4 (OLIGOPEPTIDE TRANSPORTER 4) C.G. S.X.
0.36 0 961 Zea mays Zm.16913.1.S1_at BQ619268 GT1 protein - 2e-24 At4g16370 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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