Gene omics information

Query gene ID	Ta.1977.2.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.1977.2.A1_at	BE231484	-	-	1e+0	At3g07430	emb1990 (embryo defective 1990)	S.X.	H.G.	Please select
0.80	92.2	TaAffx.39457.1.A1_at	BG904975	-	-	2e+0	Atmg00850	-	S.X.	H.G.	Please select
0.67	86.3	TaAffx.26415.1.S1_at	CA689149	-	-	4e+0	At5g62050	OXA1	S.X.	H.G.	Please select
0.67	86.3	TaAffx.56013.1.S1_at	CA658531	-	-	6e-1	At5g38410	ribulose bisphosphate carboxylase small chain 3B / RuBisCO small subunit 3B (RBCS-3B) (ATS3B)	S.X.	H.G.	Please select
0.46	66.8	TaAffx.26385.1.S1_x_at	CA689363	-	-	4e+0	At5g25090	plastocyanin-like domain-containing protein	S.X.	H.G.	Please select
0.34	48.1	Ta.2825.3.S1_x_at	CA655458	-	-	4e+0	At5g25240	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
15.7	99.6	GSM298068	Leaf tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
12.9	99.4	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
12.5	99.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.1	99.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.0	99.4	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.8	99.3	GSM298089	Leaf tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
10.9	99.3	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.8	98.9	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.5	98.9	GSM298056	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.4	98.9	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	4e-41	167	Ta.1977.1.S1_x_at	CK167391	-	-	1e+1	At5g60590	yrdC protein-related	C.G.	S.X.	Please select
0.11	5e-19	93	Ta.1977.3.S1_at	CK213192	-	-	5e+0	At4g25180	DNA binding / DNA-directed RNA polymerase	C.G.	S.X.	Please select
0.11	5e-19	93	Ta.1977.3.S1_x_at	CK213192	-	-	5e+0	At4g25180	DNA binding / DNA-directed RNA polymerase	C.G.	S.X.	Please select
0.03	1e-1	36	Ta.28136.1.S1_x_at	CK160740	-	-	1e-1	At2g42210	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	C.G.	S.X.	Please select
0.02	2e+0	32	Ta.6747.1.S1_at	CA730395	-	-	3e-3	At2g21730	CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)	C.G.	S.X.	Please select
0.03	2e+0	32	Ta.5574.1.S1_a_at	BJ227701	-	-	9e-12	At4g33240	1-phosphatidylinositol-4-phosphate 5-kinase/ ATP binding / phosphatidylinositol phosphate kinase/ protein binding / zinc ion binding	C.G.	S.X.	Please select
0.03	2e+0	32	Ta.26411.1.A1_at	CD490726	-	-	1e+0	At4g07380	unknown protein	C.G.	S.X.	Please select
0.02	6e+0	30	TaAffx.93953.1.S1_x_at	CA671468	-	-	2e-1	At3g07670	SET domain-containing protein	C.G.	S.X.	Please select
0.04	6e+0	30	TaAffx.93953.6.S1_at	CA671422	-	-	1e-9	At3g07670	SET domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+0	32	Arabidopsis thaliana	At3g07430	819931	emb1990 (embryo defective 1990)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;BOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.12	5e-1	34	Glycine max	GmaAffx.483.1.S1_at	BE022778	-	-	9e-1	At4g24160	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.21	2e-16	83	Hordeum vulgare	Contig4437_at	Contig4437	-	-	7e+0	At5g67600	unknown protein	C.G.	S.X.	Please select
0.06	1e+1	30	Oryza sativa	OsAffx.498.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	2e+0	32	Populus trichocarpa	PtpAffx.213920.1.S1_at	pmrna27138	hypothetical protein	-	2e+0	At2g45210	auxin-responsive protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e+0	30	Vitis vinifera	1611498_at	CB348680	-	-	4e+0	At3g15670	late embryogenesis abundant protein, putative / LEA protein, putative	C.G.	S.X.	Please select
0.03	6e-1	32	Zea mays	Zm.1814.1.S1_at	CN844296	hypothetical protein LOC100192709	-	9e-15	At2g35530	bZIP transcription factor family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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