Gene omics information

Query gene ID	Ta.19456.1.A1_s_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.0	Ta.19456.1.A1_s_at	CD865926	-	-	3e-1	At2g20875	EPF1 (EPIDERMAL PATTERNING FACTOR 1)	S.X.	H.G.	Please select
0.60	81.0	Ta.28185.2.S1_x_at	CD869435	-	-	6e-1	At3g46900	COPT2	S.X.	H.G.	Please select
0.50	72.4	TaAffx.47673.2.S1_s_at	CA661229	-	-	4e-3	At5g35460	unknown protein	S.X.	H.G.	Please select
0.50	72.4	TaAffx.47673.1.S1_at	BQ806349	-	-	3e-9	At5g35460	unknown protein	S.X.	H.G.	Please select
0.44	64.5	TaAffx.20065.1.S1_at	CK207580	-	-	2e-1	At3g45970	ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1)	S.X.	H.G.	Please select
0.40	58.4	Ta.28185.1.S1_at	AL820475	-	-	2e-4	At3g46900	COPT2	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
49.6	99.9	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
47.3	99.9	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
32.7	99.9	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.0	94.3	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
2.7	93.3	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
2.6	92.9	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
2.4	92.0	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
2.3	91.5	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	0	734	TaAffx.47673.1.S1_at	BQ806349	-	-	3e-9	At5g35460	unknown protein	C.G.	S.X.	Please select
0.82	0	658	Ta.24777.1.A1_at	BJ263995	-	-	2e-2	At5g35460	unknown protein	C.G.	S.X.	Please select
0.54	1e-115	416	TaAffx.47673.3.A1_at	CA648815	-	-	3e-1	At2g20875	EPF1 (EPIDERMAL PATTERNING FACTOR 1)	C.G.	S.X.	Please select
0.02	4e-1	36	Ta.5571.1.S1_at	CA626078	-	-	2e-6	At5g44030	CESA4 (CELLULOSE SYNTHASE A4)	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.17291.1.A1_at	CK207527	-	-	5e+0	At5g16710	DHAR3 (dehydroascorbate reductase 1)	C.G.	S.X.	Please select
0.01	1e+0	34	Ta.6406.1.S1_at	BJ303896	-	-	2e-5	At1g29370	kinase-related	C.G.	S.X.	Please select
0.03	6e+0	32	TaAffx.37112.1.S1_at	BJ300977	-	-	1e+0	At2g40095	unknown protein	C.G.	S.X.	Please select
0.02	6e+0	32	TaAffx.132335.1.A1_at	CK213289	-	-	8e-2	Atmg00730	-	C.G.	S.X.	Please select
0.01	6e+0	32	Ta.4721.1.S1_at	BJ240050	-	-	9e-7	At5g10470	kinesin motor protein-related	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e-1	36	Arabidopsis thaliana	At2g20875	816621	EPF1 (EPIDERMAL PATTERNING FACTOR 1)	F:molecular_function unknown;P:stomatal complex patterning;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	HgAffx.7289.1.S1_at	CB824922	-	-	3e+0	At3g43290	unknown protein	C.G.	S.X.	Please select
0.48	0	672	Hordeum vulgare	Contig7500_at	Contig7500	-	-	3e-12	At5g35460	unknown protein	C.G.	S.X.	Please select
0.26	1e-42	174	Oryza sativa	Os01g0585100	AK069774.1	-	Conserved hypothetical protein	1e-17	At5g35460	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	38	Populus trichocarpa	PtpAffx.88732.1.A1_at	CV255012	hypothetical protein	-	2e-1	At3g48480	cysteine-type peptidase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	2e+0	32	Vitis vinifera	1620835_at	BQ800355	-	-	6e-1	At3g45443	unknown protein	C.G.	S.X.	Please select
0.21	2e-19	95	Zea mays	Zm.8865.1.A1_at	BM267927	hypothetical protein LOC100191271	-	3e-9	At5g35460	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage