Gene omics information

Query gene ID	Ta.1929.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.4	Ta.1929.1.S1_at	CK212185	-	-	4e-5	At2g43610	glycoside hydrolase family 19 protein	S.X.	H.G.	Please select
0.50	72.4	TaAffx.108248.1.S1_at	CA690398	-	-	5e+0	At5g10625	-	S.X.	H.G.	Please select
0.50	72.4	Ta.12119.3.S1_at	BQ171632	-	-	8e-1	At1g48610	AT hook motif-containing protein	S.X.	H.G.	Please select
0.44	64.5	Ta.4727.1.A1_at	BJ270759	-	-	9e+0	At5g55650	unknown protein	S.X.	H.G.	Please select
0.43	62.2	TaAffx.12662.1.S1_at	BJ251737	-	-	1e+0	At3g42800	unknown protein	S.X.	H.G.	Please select
0.15	17.1	TaAffx.599.1.A1_s_at	BJ319403	-	-	1e+0	At4g12340	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
66.3	100.0	GSM314266	tissue type: seedling, leaf - rep1	GSE12508	Transcription patterns during wheat development
26.1	99.8	GSM314267	tissue type: seedling, leaf - rep2	GSE12508	Transcription patterns during wheat development
19.4	99.7	GSM314268	tissue type: seedling, leaf - rep3	GSE12508	Transcription patterns during wheat development
15.4	99.6	GSM314253	tissue type: germinating seed, coleoptile - rep3	GSE12508	Transcription patterns during wheat development
12.8	99.4	GSM298069	Leaf tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
12.8	99.4	GSM314251	tissue type: germinating seed, coleoptile - rep1	GSE12508	Transcription patterns during wheat development
9.9	99.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
9.8	99.1	GSM314252	tissue type: germinating seed, coleoptile - rep2	GSE12508	Transcription patterns during wheat development
9.2	99.0	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
9.0	99.0	GSM298065	Leaf tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.46	5e-168	591	Ta.508.1.A1_at	BG906152	-	-	3e+0	At1g12560	ATEXPA7 (ARABIDOPSIS THALIANA EXPANSIN A7)	C.G.	S.X.	Please select
0.54	2e-112	406	Ta.2783.1.S1_at	AB029935.1	chitinase 2	-	2e-4	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.35	2e-90	333	Ta.5592.1.S1_at	BJ285949	-	-	2e-2	At2g43570	chitinase, putative	C.G.	S.X.	Please select
0.22	3e-52	206	Ta.26340.1.A1_at	CK198901	-	-	4e-1	At4g01700	chitinase, putative	C.G.	S.X.	Please select
0.39	2e-47	190	TaAffx.133698.1.A1_s_at	BJ296326	-	-	1e+0	At2g43570	chitinase, putative	C.G.	S.X.	Please select
0.40	2e-44	180	Ta.5873.2.S1_at	CD902597	-	-	5e-1	At3g23830	GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)	C.G.	S.X.	Please select
0.20	4e-39	163	TaAffx.128418.43.S1_at	BJ252866	Chitinase 3	-	1e+0	At3g06868	unknown protein	C.G.	S.X.	Please select
0.35	4e-36	153	Ta.5873.1.S1_x_at	CD910379	-	-	5e-1	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.25	4e-36	153	Ta.23888.1.S1_at	CD918473	-	-	1e+0	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e-5	50	Arabidopsis thaliana	At2g43610	818963	glycoside hydrolase family 19 protein	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:plasma membrane;PBFOVM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	6e-11	69	Glycine max	Gma.2833.1.S1_s_at	AF202731.1	chitinase class I	-	9e-3	At4g01700	chitinase, putative	C.G.	S.X.	Please select
0.56	1e-93	343	Hordeum vulgare	Contig3576_at	Contig3576	-	-	1e-8	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.46	9e-48	192	Oryza sativa	Os05g0399400	L37289.1	-	Chitinase (EC 3.2.1.14)	4e-2	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	2e-5	52	Populus trichocarpa	PtpAffx.59940.1.S1_s_at	CX657241	-	-	1e-3	At2g43580	chitinase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	2e-4	46	Vitis vinifera	1621319_s_at	CB981122	-	-	3e-1	At2g43620	chitinase, putative	C.G.	S.X.	Please select
0.26	9e-26	117	Zea mays	Zm.11654.1.A1_at	CK347373	hypothetical protein LOC100280135	-	1e-5	At3g54420	ATEP3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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