Gene omics information

Query gene ID	Ta.1909.1.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.2	Ta.1909.1.A1_at	BE446796	-	-	5e-2	At3g55390	integral membrane family protein	S.X.	H.G.	Please select
0.73	89.1	Ta.10408.1.S1_at	CN009026	-	-	2e-10	At1g10470	ARR4 (RESPONSE REGULATOR 4)	S.X.	H.G.	Please select
0.67	86.3	Ta.11777.1.S1_x_at	BQ620561	-	-	5e-1	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	S.X.	H.G.	Please select
0.55	76.8	TaAffx.119928.1.A1_s_at	BJ251441	-	-	4e-2	At1g14900	HMGA (HIGH MOBILITY GROUP A)	S.X.	H.G.	Please select
0.04	5.8	Ta.1617.1.S1_at	BE443129	-	-	3e+0	At1g60080	3' exoribonuclease family domain 1-containing protein	S.X.	H.G.	Please select
0.01	2.4	Ta.20430.2.A1_at	BJ287096	-	-	4e+0	At5g27495	ion channel inhibitor	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.9	99.3	GSM250890	Tc_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.3	99.0	GSM250910	TcLr1_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.5	98.9	GSM250904	TcLr1_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.2	98.8	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.1	98.8	GSM250889	Tc_3dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.0	98.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.3	98.6	GSM250886	TcLr1_3dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.1	98.5	GSM250903	TcLr1_7dpi_mock_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.1	98.5	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
7.1	98.5	GSM250916	TcLr1_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	3e-77	287	TaAffx.82062.1.S1_at	CA678174	-	-	4e+0	At4g20960	cytidine/deoxycytidylate deaminase family protein	C.G.	S.X.	Please select
0.40	3e-59	228	Ta.11777.1.S1_x_at	BQ620561	-	-	5e-1	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	C.G.	S.X.	Please select
0.19	1e-5	50	Ta.11777.3.S1_at	CA622740	-	-	9e-1	At1g30515	unknown protein	C.G.	S.X.	Please select
0.05	2e-4	46	TaAffx.9551.1.S1_at	CA595241	-	-	1e+0	At2g36410	unknown protein	C.G.	S.X.	Please select
0.05	2e-4	46	TaAffx.117364.1.S1_x_at	BQ605944	-	-	1e+0	At3g18050	unknown protein	C.G.	S.X.	Please select
0.05	2e-4	46	TaAffx.117364.1.S1_at	BQ605944	-	-	1e+0	At3g18050	unknown protein	C.G.	S.X.	Please select
0.04	3e-3	42	TaAffx.17257.2.S1_at	CA682208	-	-	1e+0	At3g28210	PMZ	C.G.	S.X.	Please select
0.04	3e-3	42	TaAffx.17257.2.S1_x_at	CA682208	-	-	1e+0	At3g28210	PMZ	C.G.	S.X.	Please select
0.05	3e-3	42	TaAffx.110098.2.S1_at	CA681573	-	-	2e+1	At5g65390	AGP7	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-2	38	Arabidopsis thaliana	At3g55390	824705	integral membrane family protein	F:unknown;P:unknown;C:unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e-2	38	Glycine max	GmaAffx.76123.1.S1_at	BF597844	-	-	5e-2	At1g31040	unknown protein	C.G.	S.X.	Please select
0.40	9e-70	262	Hordeum vulgare	Contig8572_s_at	Contig8572	-	-	1e-1	At1g47970	unknown protein	C.G.	S.X.	Please select
0.02	4e-4	46	Oryza sativa	Os09g0447900	AK111436.1	-	Hypothetical protein	3e+0	At5g44210	ERF9 (ERF DOMAIN PROTEIN 9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	7e-2	38	Populus trichocarpa	PtpAffx.224883.1.S1_at	pmrna43787	hypothetical protein	-	5e-11	At5g49330	AtMYB111 (myb domain protein 111)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-1	34	Vitis vinifera	1618891_at	CA809387	-	-	3e+0	At4g11410	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.05	6e-3	40	Zea mays	Zm.4196.1.A1_x_at	AI739903	ethylene-responsive factor-like protein 1	-	1e+0	At1g22790	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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