Gene omics information

Query gene ID	Ta.1905.3.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.97	99.6	Ta.1905.3.S1_x_at	BJ282136	-	-	2e-2	At5g06460	ATUBA2	S.X.	H.G.	Please select
0.57	79.2	Ta.13236.1.S1_at	BM136267	SUSIBA2-like protein	-	2e-18	At4g26640	WRKY20	S.X.	H.G.	Please select
0.55	76.8	Ta.28553.1.S1_s_at	X56601.1	ubiquitin /// ubiquitin	-	7e-57	At4g05050	UBQ11 (UBIQUITIN 11)	S.X.	H.G.	Please select
0.54	75.5	AFFX-Tae-r2-Bs-thr-5_s_at	AFFX-Tae-r2-Bs-thr-5	-	-	0			S.X.	H.G.	Please select
0.53	74.9	Ta.16668.1.S1_x_at	CK212492	-	-	2e+0	At3g54826	-	S.X.	H.G.	Please select
0.53	74.9	Ta.28553.6.S1_x_at	BJ221503	-	-	7e-47	At4g02890	UBQ14	S.X.	H.G.	Please select
0.52	73.7	Ta.1058.1.S1_x_at	CK168726	S-adenosylmethionine decarboxylase precursor	-	5e-12	At3g02468	CPuORF9 (Conserved peptide upstream open reading frame 9)	S.X.	H.G.	Please select
0.52	73.7	Ta.12565.1.S1_at	CK205701	-	-	2e-3	At4g24690	ubiquitin-associated (UBA)/TS-N domain-containing protein / octicosapeptide/Phox/Bemp1 (PB1) domain-containing protein	S.X.	H.G.	Please select
0.48	69.0	Ta.11141.2.S1_s_at	CD879301	-	-	2e-99	At1g23490	ATARF1 (ADP-RIBOSYLATION FACTOR 1)	S.X.	H.G.	Please select
0.48	69.0	AFFX-Tae-r2-Ec-bioB-3_at	AFFX-Tae-r2-Ec-bioB-3	-	-	0			S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.3	98.6	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.7	95.8	GSM111185	genotype C22 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.6	95.6	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.1	94.5	GSM138144	Genotype RL4452 developing seed at 5 days after anthesis, biological rep1 location SB	GSE5937	Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
3.0	94.3	GSM138147	genotype G13 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9	94.0	GSM138210	genotype B65 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9	94.0	GSM139928	Anther immature pollen rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8	93.6	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.5	92.5	GSM111221	genotype H23 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.5	92.5	GSM111182	genotype A40 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.92	0	973	Ta.1905.3.S1_at	BJ282136	-	-	2e-2	At5g06460	ATUBA2	C.G.	S.X.	Please select
0.27	5e-123	440	Ta.1905.1.A1_x_at	CA657392	-	-	3e-24	At2g30110	ATUBA1	C.G.	S.X.	Please select
0.27	5e-123	440	Ta.1905.1.A1_a_at	CA657392	-	-	3e-24	At2g30110	ATUBA1	C.G.	S.X.	Please select
0.27	1e-92	339	Ta.1905.2.A1_x_at	BE446722	-	-	2e-9	At2g30110	ATUBA1	C.G.	S.X.	Please select
0.17	3e-75	282	Ta.95.1.S1_at	M90663.1	-	-	4e-32	At2g30110	ATUBA1	C.G.	S.X.	Please select
0.37	9e-51	200	TaAffx.31178.1.S1_at	CA618757	-	-	8e-11	At2g30110	ATUBA1	C.G.	S.X.	Please select
0.08	3e-10	65	Ta.684.1.S1_at	M90664.1	-	-	3e-24	At5g06460	ATUBA2	C.G.	S.X.	Please select
0.05	2e-5	50	Ta.6439.2.S1_at	BJ256647	-	-	7e-2	At2g20825	ULT2 (ULTRAPETALA 2)	C.G.	S.X.	Please select
0.05	2e-5	50	Ta.6439.2.S1_a_at	BJ256647	-	-	7e-2	At2g20825	ULT2 (ULTRAPETALA 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-2	40	Arabidopsis thaliana	At5g06460	830534	ATUBA2	Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.19339.1.S1_at	BQ079710	-	-	8e-1	At5g47170	unknown protein	C.G.	S.X.	Please select
0.21	2e-111	400	Hordeum vulgare	Contig3327_at	Contig3327	-	-	7e-23	At2g30110	ATUBA1	C.G.	S.X.	Please select
0.13	8e-65	248	Oryza sativa	Os11g0106400	AK111781.1	-	Ubiquitin-activating enzyme family protein	7e-31	At2g30110	ATUBA1	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	1e-4	48	Populus trichocarpa	PtpAffx.73338.3.S1_s_at	CV262876	hypothetical protein	-	9e-30	At2g30110	ATUBA1	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	1e+0	32	Vitis vinifera	1615582_at	CF200930.1	hypothetical protein LOC100259069	-	2e-17	At5g26210	AL4 (ALFIN-LIKE 4)	C.G.	S.X.	Please select
0.29	2e-59	228	Zea mays	Zm.16237.1.A1_at	CF624893	-	-	5e-13	At2g30110	ATUBA1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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