Gene omics information

Query gene ID	Ta.18704.1.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.2	Ta.18704.1.S1_x_at	BT009605.1	-	-	3e-5	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	S.X.	H.G.	Please select
0.71	88.0	Ta.18704.1.S1_at	BT009605.1	-	-	3e-5	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	S.X.	H.G.	Please select
0.42	60.9	Ta.21139.1.A1_at	CA722357	-	-	2e+1	At4g23895	pleckstrin homology (PH) domain-containing protein-related	S.X.	H.G.	Please select
0.37	53.0	Ta.16216.1.S1_s_at	CA602710	-	-	4e+0	At3g51260	PAD1 (20s proteasome alpha subunit pad1)	S.X.	H.G.	Please select
0.33	46.9	Ta.30706.1.S1_at	AY543532.1	expansin EXPA6	-	8e+0	At2g03090	ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)	S.X.	H.G.	Please select
0.33	46.9	Ta.1708.1.A1_at	BE445919	-	-	3e-1	At5g50430	UBC33 (ubiquitin-conjugating enzyme 33)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
84.1	100.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
77.1	100.0	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
29.3	99.8	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
13.7	99.5	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
9.9	99.1	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
9.8	99.1	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
8.2	98.8	GSM314280	tissue type: anthers, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
7.3	98.6	GSM314278	tissue type: anthers, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
5.7	97.9	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.6	97.8	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.85	0	1314	Ta.18704.1.S1_at	BT009605.1	-	-	3e-5	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.33	4e-54	212	TaAffx.113708.1.S1_at	CA606580	-	-	4e+0	At1g63190	-	C.G.	S.X.	Please select
0.18	7e-28	125	Ta.26864.1.A1_at	CD491493	-	-	3e-19	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select
0.19	6e-16	85	Ta.28321.1.S1_a_at	CK211481	Ubiquitin-conjugating enzyme	-	2e-25	At3g08690	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)	C.G.	S.X.	Please select
0.16	6e-16	85	Ta.28321.2.S1_x_at	BQ805795	Ubiquitin-conjugating enzyme	-	3e-30	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	C.G.	S.X.	Please select
0.09	6e-13	75	Ta.28849.1.S1_at	BQ609539	Ubiquitin-conjugating enzyme	-	5e-8	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	C.G.	S.X.	Please select
0.15	6e-13	75	Ta.17403.1.S1_at	CA620516	-	-	4e-34	At3g08690	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)	C.G.	S.X.	Please select
0.13	1e-11	71	Ta.20825.1.S1_at	CA620686	-	-	3e-26	At3g08690	UBC11 (UBIQUITIN-CONJUGATING ENZYME 11)	C.G.	S.X.	Please select
0.06	2e-10	67	Ta.13700.1.S1_at	CA486450	-	-	5e-50	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	3e-5	50	Arabidopsis thaliana	At5g53300	835411	UBC10 (ubiquitin-conjugating enzyme 10)	Encodes a ubiquitin conjugating enzyme.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.26	3e-9	63	Glycine max	Gma.15387.1.S1_s_at	CD399274	-	-	8e-55	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.69	0	708	Hordeum vulgare	Contig9642_at	Contig9642	-	-	1e-13	At4g27960	UBC9 (UBIQUITIN CONJUGATING ENZYME 9)	C.G.	S.X.	Please select
0.35	6e-104	379	Oryza sativa	Os09g0293400	AK059627.1	-	Ubiquitin-conjugating enzyme E2	1e-10	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.14	1e-8	61	Populus trichocarpa	Ptp.6073.1.S1_at	CF230068	hypothetical protein	-	9e-30	At1g64230	ubiquitin-conjugating enzyme, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.18	4e-8	57	Vitis vinifera	1612192_s_at	CF518716	similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase	-	8e-86	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	C.G.	S.X.	Please select
0.32	5e-98	357	Zea mays	Zm.6268.1.A1_at	BM073308	hypothetical protein LOC100192813	-	2e-3	At2g16740	UBC29 (ubiquitin-conjugating enzyme 29)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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