Gene omics information

Query gene ID	Ta.1862.2.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.4	Ta.1862.2.S1_x_at	CA690286	-	-	1e-12	At1g53400	unknown protein	S.X.	H.G.	Please select
0.91	98.2	Ta.6082.1.S1_x_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	S.X.	H.G.	Please select
0.83	93.4	Ta.6082.1.S1_at	BQ752961	-	-	5e-1	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	S.X.	H.G.	Please select
0.80	92.2	Ta.7147.3.S1_x_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	S.X.	H.G.	Please select
0.73	89.1	Ta.7147.3.S1_a_at	BJ315882	-	-	5e-3	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	S.X.	H.G.	Please select
0.61	82.0	Ta.7147.2.S1_at	CK161455	-	-	9e-9	At3g54300	ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.3	98.6	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
5.8	97.9	GSM314274	tissue type: floral bracts, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
5.5	97.8	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
5.3	97.6	GSM143515	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
5.0	97.4	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM298091	Leaf tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM143517	Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
3.8	96.0	GSM314272	tissue type: floral bracts, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
3.8	96.0	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.7	95.8	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.57	0	664	Ta.1862.1.S1_at	CK211902	-	-	1e-13	At1g53400	unknown protein	C.G.	S.X.	Please select
0.57	0	664	Ta.1862.1.S1_a_at	CK211902	-	-	1e-13	At1g53400	unknown protein	C.G.	S.X.	Please select
0.41	7e-110	397	Ta.1862.3.S1_at	CA644887	-	-	8e-14	At1g53400	unknown protein	C.G.	S.X.	Please select
0.17	8e-17	87	TaAffx.92570.1.S1_at	BJ264698	-	-	2e-9	At1g16960	unknown protein	C.G.	S.X.	Please select
0.17	1e-9	63	Ta.9734.1.A1_at	CA655303	-	-	4e-7	At1g16960	unknown protein	C.G.	S.X.	Please select
0.26	1e-9	63	Ta.4451.1.A1_at	BJ266471	-	-	3e-8	At5g45740	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	TaAffx.20596.1.S1_s_at	CA690601	-	-	2e-7	At4g21010	transcription initiation factor-related	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.117361.2.S1_at	BJ271986	-	-	2e-1	At3g10915	reticulon family protein	C.G.	S.X.	Please select
0.04	1e+0	34	TaAffx.110686.1.S1_at	CA670398	-	-	4e+0	At1g23350	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	1e-12	73	Arabidopsis thaliana	At1g53400	841776	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MPFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	3e-20	99	Glycine max	Gma.4123.1.S1_at	BG511670	-	-	2e-21	At1g53400	unknown protein	C.G.	S.X.	Please select
0.18	9e-12	69	Hordeum vulgare	Contig16370_at	Contig16370	-	-	3e-8	At5g45740	unknown protein	C.G.	S.X.	Please select
0.43	2e-77	289	Oryza sativa	Os09g0345000	AK121772.1	-	Conserved hypothetical protein	7e-12	At1g53400	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.23	7e-18	91	Populus trichocarpa	PtpAffx.60868.1.S1_at	CV240300	hypothetical protein	-	7e-15	At1g53400	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	5e-34	143	Vitis vinifera	1612732_at	CD714809	-	-	2e-25	At1g53400	unknown protein	C.G.	S.X.	Please select
0.12	3e-17	87	Zea mays	Zm.12084.1.A1_at	BM381384	ubiquitin domain containing 1	-	3e-10	At5g45740	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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