Gene omics information

Query gene ID	Ta.1816.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	89.8	Ta.1816.1.S1_at	AJ614274	-	-	2e+0	At5g06200	integral membrane family protein	S.X.	H.G.	Please select
0.64	83.6	Ta.8547.1.S1_at	M95747.1	initiation factor (iso)4f p82 subunit	-	8e-15	At5g57870	eukaryotic translation initiation factor 4F, putative / eIF-4F, putative	S.X.	H.G.	Please select
0.52	73.7	Ta.2982.2.S1_x_at	CK206222	-	-	8e-29	At1g30580	GTP binding	S.X.	H.G.	Please select
0.52	73.7	Ta.4582.1.S1_at	CK172043	-	-	3e-23	At3g52140	tetratricopeptide repeat (TPR)-containing protein	S.X.	H.G.	Please select
0.49	69.7	Ta.2490.1.S1_at	BJ250631	-	-	4e-46	At3g59990	MAP2B (METHIONINE AMINOPEPTIDASE 2B)	S.X.	H.G.	Please select
0.44	64.5	Ta.2982.1.S1_x_at	AY135021.1	GTP-binding protein	-	3e-37	At1g30580	GTP binding	S.X.	H.G.	Please select
0.39	56.1	Ta.2776.1.S1_at	AY059462.1	68 kDa protein HP68	-	7e-27	At4g19210	ATRLI2	S.X.	H.G.	Please select
0.37	53.0	Ta.3075.1.A1_at	CA497208	-	-	8e-15	At3g04600	tRNA synthetase class I (W and Y) family protein	S.X.	H.G.	Please select
0.37	53.0	Ta.2706.3.S1_at	CK205780	-	-	2e-15	At1g79920	ATP binding	S.X.	H.G.	Please select
0.36	51.9	Ta.1529.1.S1_at	CK153906	-	-	5e-21	At4g39280	phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.8	97.2	GSM298062	Crown tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.7	97.1	GSM298059	Crown tissue of Harnesk at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.6	97.0	GSM298060	Crown tissue of Harnesk at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.9	96.1	GSM298061	Crown tissue of Harnesk at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.7	95.8	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.4	95.2	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.3	95.0	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.1	94.5	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.33	3e-86	319	TaAffx.113769.1.S1_at	CA605461	-	-	6e-2	At5g13050	5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE)	C.G.	S.X.	Please select
0.20	3e-24	113	TaAffx.85499.1.S1_at	CA622195	-	-	2e+1	At3g16500	PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1)	C.G.	S.X.	Please select
0.03	2e-7	57	Ta.510.3.S1_a_at	AJ612741	-	-	3e-10	At5g66530	aldose 1-epimerase family protein	C.G.	S.X.	Please select
0.03	2e-7	57	Ta.25593.1.S1_at	AJ610247	-	-	2e+0	At5g15830	AtbZIP3 (Arabidopsis thaliana basic leucine-zipper 3)	C.G.	S.X.	Please select
0.03	2e-7	57	Ta.12067.3.A1_at	AJ615448	-	-	1e+0	At4g17790	-	C.G.	S.X.	Please select
0.03	2e-7	57	Ta.12067.3.A1_x_at	AJ615448	-	-	1e+0	At4g17790	-	C.G.	S.X.	Please select
0.03	4e-5	50	Ta.28209.2.S1_x_at	AJ614964	-	-	2e+1	At3g25050	XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3)	C.G.	S.X.	Please select
0.02	2e-4	48	Ta.1147.2.S1_a_at	CA599073	-	-	8e+0	At4g18692	unknown protein	C.G.	S.X.	Please select
0.02	2e-4	48	Ta.1147.2.S1_x_at	CA599073	-	-	8e+0	At4g18692	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e+0	34	Arabidopsis thaliana	At5g06200	830507	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	6e-5	50	Glycine max	Gma.15437.1.S1_at	BG508889	-	-	8e+0	At5g24655	LSU4 (RESPONSE TO LOW SULFUR 4)	C.G.	S.X.	Please select
0.75	0	1298	Hordeum vulgare	Contig10164_at	Contig10164	-	-	6e-4	At5g13050	5-FCL (5-FORMYLTETRAHYDROFOLATE CYCLOLIGASE)	C.G.	S.X.	Please select
0.58	0	688	Oryza sativa	Os07g0578600	AK067155.1	-	5-formyltetrahydrofolate cycloligase (EC 6.3.3.2)	5e-1	At1g70690	HWI1 (HOPW1-1-INDUCED GENE1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.08	3e-3	44	Populus trichocarpa	Ptp.158.1.S1_at	CK087404	5-formyltetrahydrofolate cyclo-ligase	-	6e+0	At5g35300	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-1	34	Vitis vinifera	1621053_at	CF414284	hypothetical protein LOC100258640	-	1e-9	At1g66430	pfkB-type carbohydrate kinase family protein	C.G.	S.X.	Please select
0.03	2e-2	40	Zea mays	Zm.16189.3.A1_at	CD484948	hypothetical protein LOC100276118	-	4e-1	At2g40290	eukaryotic translation initiation factor 2 subunit 1, putative / eIF-2A, putative / eIF-2-alpha, putative	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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