Gene omics information

Query gene ID	Ta.1800.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.65	83.9	Ta.1800.1.S1_at	BE445382	-	-	4e+0	At3g55646	unknown protein	S.X.	H.G.	Please select
0.72	88.3	Ta.7279.1.S1_at	CK152216	-	-	1e+1	At2g47400	CP12-1	S.X.	H.G.	Please select
0.67	86.3	Ta.6810.1.S1_a_at	CD492006	-	-	6e-1	At5g60360	AALP (Arabidopsis aleurain-like protease)	S.X.	H.G.	Please select
0.65	83.9	Ta.6810.1.S1_at	CD492006	-	-	6e-1	At5g60360	AALP (Arabidopsis aleurain-like protease)	S.X.	H.G.	Please select
0.64	83.6	Ta.19599.1.S1_at	CA653901	-	-	8e-1	At1g02130	ARA-5 (ARABIDOPSIS RAS 5)	S.X.	H.G.	Please select
0.63	83.1	TaAffx.128418.94.S1_at	CA631260	-	-	4e+0	At5g60460	sec61beta family protein	S.X.	H.G.	Please select
0.61	82.0	Ta.27000.1.A1_at	CD454142	-	-	8e+0	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	S.X.	H.G.	Please select
0.57	79.2	Ta.3628.1.S1_x_at	CF133144	-	-	2e+0	At1g73510	unknown protein	S.X.	H.G.	Please select
0.57	79.2	Ta.13535.1.S1_at	BE444975	-	-	1e+1	At5g19151	unknown protein	S.X.	H.G.	Please select
0.56	78.6	TaAffx.70418.1.S1_at	BQ802731	-	-	3e+1	At5g53040	RWP-RK domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
44.6	99.9	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
31.8	99.9	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
23.7	99.8	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
23.3	99.8	GSM298073	Crown tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
23.1	99.8	GSM298074	Crown tissue of Paragon at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
19.2	99.7	GSM298076	Crown tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
13.9	99.5	GSM298075	Crown tissue of Paragon at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
13.2	99.5	GSM314257	tissue type: germinating seed, embryo - rep1	GSE12508	Transcription patterns during wheat development
12.2	99.4	GSM298072	Crown tissue of Paragon at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
10.8	99.2	GSM298094	Crown tissue of Solstice at 9 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	TaAffx.122529.1.S1_at	CA707819	-	-	2e+0	At5g58490	cinnamoyl-CoA reductase family	C.G.	S.X.	Please select
0.03	2e-1	36	Ta.26248.1.A1_at	CD491678	-	-	1e-3	At5g67020	unknown protein	C.G.	S.X.	Please select
0.04	9e-1	34	TaAffx.128585.4.S1_x_at	CA724766	-	-	3e+0	At4g01915	unknown protein	C.G.	S.X.	Please select
0.01	9e-1	34	Ta.28697.2.S1_a_at	AF338432.1	starch branching enzyme 2	-	5e-74	At5g03650	SBE2.2 (starch branching enzyme 2.2)	C.G.	S.X.	Please select
0.03	9e-1	34	Ta.13706.1.S1_at	BQ281222	-	-	7e-2	At3g48550	-	C.G.	S.X.	Please select
0.04	4e+0	32	TaAffx.8445.1.S1_at	CA625787	-	-	2e+1	Atmg00540	-	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.29187.1.S1_at	CA648449	-	-	2e+1	At5g64080	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.112099.1.S1_at	CA620373	-	-	2e-5	At1g24470	short-chain dehydrogenase/reductase (SDR) family protein	C.G.	S.X.	Please select
0.03	4e+0	32	TaAffx.109049.1.S1_at	CA680837	-	-	1e+0	At2g05915	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	4e+0	32	Arabidopsis thaliana	At3g55646	3769719	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	GmaAffx.69025.1.A1_at	BE661661	-	-	8e-1	At2g22720	-	C.G.	S.X.	Please select
0.62	1e-44	178	Hordeum vulgare	Contig22860_at	Contig22860	-	-	4e-1	At1g67030	ZFP6 (ZINC FINGER PROTEIN 6)	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.23776.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	PtpAffx.249.623.A1_a_at	CV279333	hypothetical protein	-	1e+0	At2g16040	hAT dimerisation domain-containing protein / transposase-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	4e+0	30	Vitis vinifera	1620871_at	CF511262	-	-	2e+1	At5g56070	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	34	Zea mays	ZmAffx.719.1.A1_at	AI739898	-	-	2e+0	At3g55646	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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