Gene omics information

Query gene ID	Ta.1770.1.S1_a_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	Ta.1770.1.S1_a_at	CK209608	-	-	6e-1	At4g32930	unknown protein	S.X.	H.G.	Please select
0.73	89.1	Ta.27752.1.S1_at	CK213059	-	-	4e-10	At5g01650	macrophage migration inhibitory factor family protein / MIF family protein	S.X.	H.G.	Please select
0.73	89.1	Ta.27752.1.S1_x_at	CK213059	-	-	4e-10	At5g01650	macrophage migration inhibitory factor family protein / MIF family protein	S.X.	H.G.	Please select
0.50	72.4	Ta.4980.1.S1_at	CK213203	-	-	9e+0	At5g51990	CBF4 (C- REPEAT-BINDING FACTOR 4)	S.X.	H.G.	Please select
0.46	66.8	Ta.4266.1.S1_at	BJ228326	-	-	1e-32	At1g26550	peptidyl-prolyl cis-trans isomerase PPIC-type family protein	S.X.	H.G.	Please select
0.21	25.5	Ta.9607.1.A1_a_at	CA708572	-	-	5e+0	At5g24510	60s acidic ribosomal protein P1, putative	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.5	95.4	GSM139914	Anther pre-meiosis rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.3	95.0	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.1	94.5	GSM139912	Anther pre-meiosis rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.9	94.0	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8	93.6	GSM139924	Anther telophaseI-telophaseII rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8	93.6	GSM139922	Anther telophaseI-telophaseII rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.8	93.6	GSM139921	Anther diplotene-anaphaseI rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.7	93.3	GSM111211	genotype B11 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.7	93.3	GSM139929	Anther immature pollen rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.6	92.9	GSM139920	Anther diplotene-anaphaseI rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.78	0	1635	Ta.1770.1.S1_at	CK209608	-	-	6e-1	At4g32930	unknown protein	C.G.	S.X.	Please select
0.38	3e-148	525	Ta.1770.3.S1_x_at	CA654693	-	-	7e-2	At1g62500	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.38	3e-148	525	Ta.1770.3.S1_at	CA654693	-	-	7e-2	At1g62500	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.35	3e-83	309	Ta.1770.2.S1_at	CA605167	-	-	1e+0	At1g22950	iron ion binding / oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	C.G.	S.X.	Please select
0.15	4e-30	133	TaAffx.85420.1.S1_at	CA622870	-	-	2e-2	At3g18560	unknown protein	C.G.	S.X.	Please select
0.05	5e-8	59	TaAffx.86830.1.S1_at	CA599958	-	-	4e+0	At5g50070	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.06	5e-5	50	TaAffx.109647.2.S1_at	CA675371	-	-	4e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	C.G.	S.X.	Please select
0.06	5e-5	50	Ta.10143.3.S1_x_at	CA745853	-	-	2e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	C.G.	S.X.	Please select
0.03	2e-4	48	TaAffx.78140.1.S1_at	CA737007	-	-	2e+0	At2g26020	PDF1.2b (plant defensin 1.2b)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	6e-1	36	Arabidopsis thaliana	At4g32930	829430	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	6e-2	40	Glycine max	GmaAffx.89866.1.A1_x_at	CK605817	-	-	4e+0	At3g07590	small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative	C.G.	S.X.	Please select
0.72	0	1193	Hordeum vulgare	Contig6573_at	Contig6573	-	-	2e-3	At1g62500	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.33	2e-61	238	Oryza sativa	Os01g0565600	AK061216.1	-	Eukaryotic protein of unknown function DUF866family protein	5e-1	At5g08410	FTRA2 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 2)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	2e-5	52	Populus trichocarpa	Ptp.4409.1.S1_at	CV268536	hypothetical protein	-	8e-15	At4g32930	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	1e-5	50	Vitis vinifera	1617282_at	CF404073	hypothetical protein LOC100254402	-	2e-9	At4g32930	unknown protein	C.G.	S.X.	Please select
0.34	2e-66	252	Zea mays	Zm.10817.2.A1_a_at	AY104166.1	hypothetical protein LOC100276599	-	2e-3	At4g32930	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage