Gene omics information

Query gene ID	Ta.17356.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.17356.1.S1_at	CA619985	-	-	1e-1	At4g34970	ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)	S.X.	H.G.	Please select
0.50	72.4	Ta.24041.1.A1_x_at	CA722251	-	-	1e+0	At4g36240	zinc finger (GATA type) family protein	S.X.	H.G.	Please select
0.33	46.9	Ta.18356.1.S1_at	CA635027	-	-	3e+0	At1g48000	MYB112 (myb domain protein 112)	S.X.	H.G.	Please select
0.31	42.7	Ta.3444.1.S1_at	BJ251316	-	-	5e-1	At4g26965	NADH:ubiquinone oxidoreductase family protein	S.X.	H.G.	Please select
0.18	21.0	TaAffx.84292.1.S1_at	CA640524	-	-	2e+0	At4g05070	unknown protein	S.X.	H.G.	Please select
0.01	2.4	TaAffx.34643.1.S1_at	CA705309	-	-	5e-2	At3g07510	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.8	99.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.6	98.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
5.2	97.5	GSM111177	genotype E5 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
4.8	97.2	GSM314275	tissue type: pistil, before anthesis - rep1	GSE12508	Transcription patterns during wheat development
4.7	97.1	GSM138137	Genotype Domain developing seed at 5 days after anthesis, biological rep3 location SB	GSE5937	Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
4.2	96.6	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2	96.6	GSM138188	genotype F38a developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
4.2	96.6	GSM298056	Leaf tissue of Harnesk at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM298071	Crown tissue of Paragon at 3 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e-2	40	TaAffx.92973.1.A1_at	BJ238101	-	-	1e+0	At4g36260	STY2 (STYLISH 2)	C.G.	S.X.	Please select
0.03	2e-1	36	Ta.18239.1.S1_at	CA632242	-	-	3e-5	At3g46010	ADF1 (ACTIN DEPOLYMERIZING FACTOR 1)	C.G.	S.X.	Please select
0.04	6e-1	34	TaAffx.112064.1.S1_at	CA627343	-	-	8e-2	At4g14060	major latex protein-related / MLP-related	C.G.	S.X.	Please select
0.05	2e+0	32	TaAffx.53352.2.S1_x_at	CA678141	-	-	1e+0	At1g80050	APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2)	C.G.	S.X.	Please select
0.05	2e+0	32	TaAffx.53352.2.S1_at	CA678141	-	-	1e+0	At1g80050	APT2 (ADENINE PHOSPHORIBOSYL TRANSFERASE 2)	C.G.	S.X.	Please select
0.03	2e+0	32	TaAffx.53352.1.S1_at	CA662845	-	-	4e-2	At4g30050	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	32	TaAffx.53352.1.S1_x_at	CA662845	-	-	4e-2	At4g30050	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	TaAffx.30628.1.S1_at	CA623492	-	-	1e-3	At2g35960	NHL12	C.G.	S.X.	Please select
0.01	2e+0	32	TaAffx.12194.1.S1_at	BJ282316	-	-	4e+0	At5g41980	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	1e-1	36	Arabidopsis thaliana	At4g34970	829649	ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)	F:actin binding;P:biological_process unknown;C:intracellular;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e+0	32	Glycine max	PsAffx.CL2388Contig1_at	PsAffx.CL2388Contig1	-	-	5e+0	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	C.G.	S.X.	Please select
0.17	1e-34	145	Hordeum vulgare	Contig5692_s_at	Contig5692	-	-	6e-12	At4g34970	ADF9 (ACTIN DEPOLYMERIZING FACTOR 9)	C.G.	S.X.	Please select
0.14	4e-22	105	Oryza sativa	Os03g0243100	AK104056.1	-	Actin-depolymerizing factor 5 (ADF-5) (AtADF5)	2e-16	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+1	30	Populus trichocarpa	PtpAffx.69616.1.A1_at	CV250609	-	-	7e+0	At4g19910	Toll-Interleukin-Resistance (TIR) domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	30	Vitis vinifera	1616364_at	CB923140	-	-	1e+0	At5g65140	trehalose-6-phosphate phosphatase, putative	C.G.	S.X.	Please select
0.37	3e-81	299	Zea mays	Zm.1019.1.A1_at	AW288674	actin-depolymerizing factor 5	-	2e-19	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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