Gene omics information

Query gene ID	Ta.17334.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.80	92.2	Ta.17334.1.S1_at	CA619770	-	-	5e-5	At4g27230	HTA2 (histone H2A)	S.X.	H.G.	Please select
0.67	86.3	Ta.28609.2.S1_x_at	BJ216465	-	-	3e-12	At2g19750	40S ribosomal protein S30 (RPS30A)	S.X.	H.G.	Please select
0.60	81.0	TaAffx.55874.1.S1_at	CA660028	-	-	1e+1	At4g32680	unknown protein	S.X.	H.G.	Please select
0.55	76.8	Ta.11247.2.A1_at	BQ169698	-	-	8e+0	At5g51890	peroxidase	S.X.	H.G.	Please select
0.50	72.4	TaAffx.58573.1.S1_at	CA618425	-	-	2e-11	At3g62250	UBQ5 (ubiquitin 5)	S.X.	H.G.	Please select
0.29	39.2	Ta.28010.1.S1_at	CD938367	-	-	5e-1	At1g41920	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
14.1	99.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.7	99.2	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.5	99.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
9.5	99.1	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
8.3	98.8	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.1	98.5	GSM139927	Anther tetrads rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.9	98.4	GSM298093	Crown tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
5.3	97.6	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM298064	Crown tissue of Harnesk at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
4.1	96.4	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.24	1e-49	196	Ta.29542.1.S1_x_at	D38087.1	protein H2A	-	1e-10	At1g08880	H2AXA	C.G.	S.X.	Please select
0.20	1e-49	196	Ta.27192.1.S1_at	D38088.1	protein H2A	-	3e-9	At1g08880	H2AXA	C.G.	S.X.	Please select
0.20	1e-49	196	Ta.27192.1.S1_s_at	D38088.1	protein H2A	-	3e-9	At1g08880	H2AXA	C.G.	S.X.	Please select
0.49	6e-45	180	TaAffx.112686.1.S1_at	CA621916	-	-	2e-1	At4g16140	proline-rich family protein	C.G.	S.X.	Please select
0.22	4e-43	174	Ta.27657.6.S1_x_at	BJ274465	Protein H2A	-	1e-10	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.24	6e-42	171	Ta.27657.12.S1_at	CD869995	Protein H2A /// Protein H2A	-	3e-8	At1g08880	H2AXA	C.G.	S.X.	Please select
0.29	2e-41	169	Ta.28802.3.S1_at	BJ228498	-	-	1e-3	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.31	3e-40	165	TaAffx.85379.1.S1_s_at	CA623244	-	-	2e-2	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.23	1e-39	163	Ta.27657.2.S1_x_at	CD934994	-	-	7e-15	At1g08880	H2AXA	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.12	5e-5	48	Arabidopsis thaliana	At4g27230	828831	HTA2 (histone H2A)	Encodes HTA2, a histone H2A protein.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.23	1e-6	54	Glycine max	PsAffx.C4000035_at	PsAffx.C4000035	-	-	4e+0	At5g59870	HTA6	C.G.	S.X.	Please select
0.28	2e-39	161	Hordeum vulgare	Contig17259_at	Contig17259	-	-	5e-6	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select
0.25	3e-39	163	Oryza sativa	Os03g0279200	CA753594	-	Histone H2A	1e-7	At5g02560	HTA12	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	7e-2	38	Populus trichocarpa	Ptp.6653.1.S1_at	CV238011	histone 2	-	1e-26	At1g54690	GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.09	2e-1	34	Vitis vinifera	1608927_at	CF512418	hypothetical protein LOC100241700	-	2e+0	At1g51060	HTA10	C.G.	S.X.	Please select
0.56	2e-141	500	Zea mays	Zm.16911.1.A1_at	BM332269	-	-	3e-11	At4g27230	HTA2 (histone H2A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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