Gene omics information

Query gene ID	Ta.17309.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.17309.1.S1_at	CA619522	-	-	4e+0	At5g61660	glycine-rich protein	S.X.	H.G.	Please select
0.09	10.4	Ta.25522.2.S1_x_at	CA683586	-	-	2e-1	At4g13560	UNE15 (unfertilized embryo sac 15)	S.X.	H.G.	Please select
0.09	10.4	Ta.12058.2.S1_x_at	CA661976	-	-	1e+0	At5g42980	ATTRX3 (THIOREDOXIN 3)	S.X.	H.G.	Please select
0.05	6.7	Ta.4417.1.S1_a_at	CD880116	-	-	4e-1	At3g53470	unknown protein	S.X.	H.G.	Please select
0.02	3.6	Ta.30910.1.S1_at	CN013283	-	-	1e+0	At1g67700	unknown protein	S.X.	H.G.	Please select
0.02	3.6	Ta.23341.1.S1_at	CA689506	-	-	4e+0	At4g17900	zinc-binding family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.7	99.7	GSM298078	Leaf tissue of Solstice at 3 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
16.1	99.6	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.3	99.3	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
11.1	99.3	GSM315203	target strand labeled: Antisense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
9.6	99.1	GSM298070	Leaf tissue of Paragon at 9 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
8.9	99.0	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.8	98.7	GSM250909	TcLr1_7dpi_mock_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.2	98.5	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
6.4	98.2	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
6.0	98.0	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	8e-11	67	TaAffx.44342.1.S1_at	CK212299	-	-	2e-5	At4g25433	peptidoglycan-binding LysM domain-containing protein	C.G.	S.X.	Please select
0.03	7e-2	38	TaAffx.112527.1.S1_x_at	BQ606406	-	-	3e-1	At5g65480	unknown protein	C.G.	S.X.	Please select
0.03	7e-2	38	TaAffx.112527.1.S1_at	BQ606406	-	-	3e-1	At5g65480	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.31270.1.S1_at	CA617968	-	-	4e+0	At5g60140	transcriptional factor B3 family protein	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.110495.1.S1_at	CA727701	-	-	2e+0	At5g20900	JAZ12 (JASMONATE-ZIM-DOMAIN PROTEIN 12)	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.105609.2.S1_at	CA659496	-	-	4e+0	At2g15830	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.105609.2.S1_x_at	CA659496	-	-	4e+0	At2g15830	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	Ta.3560.1.S1_s_at	BJ318088	-	-	2e-4	At3g47810	MAG1 (MAIGO 1)	C.G.	S.X.	Please select
0.03	3e-1	36	Ta.2961.2.S1_at	CD490361	-	-	1e+0	At3g07570	membrane protein, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	4e+0	32	Arabidopsis thaliana	At5g61660	836288	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e-1	38	Glycine max	GmaAffx.60948.1.S1_at	BE058917	-	-	4e+0	At5g56600	PRF3 (PROFILIN 3)	C.G.	S.X.	Please select
0.17	4e-11	67	Hordeum vulgare	Contig24141_at	Contig24141	-	-	2e-5	At4g25433	peptidoglycan-binding LysM domain-containing protein	C.G.	S.X.	Please select
0.23	9e-9	61	Oryza sativa	Os10g0524300	AK063244.1	-	Peptidoglycan-binding LysM domain containingprotein	5e-9	At4g25433	peptidoglycan-binding LysM domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	6e+0	32	Populus trichocarpa	PtpAffx.213059.1.S1_at	pmrna25553	hypothetical protein	-	1e-20	At4g25433	peptidoglycan-binding LysM domain-containing protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	8e-2	36	Vitis vinifera	1618614_at	CF404904	hypothetical protein LOC100260667	-	2e-5	At5g62100	ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2)	C.G.	S.X.	Please select
0.41	3e-88	323	Zea mays	Zm.18088.1.A1_at	CF631068	lysM domain containing protein	-	4e-1	At5g62150	peptidoglycan-binding LysM domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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