CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.16491.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.72 88.3 Ta.16491.1.S1_at CA607237 - - 9e+0 At3g07190 - S.X. H.G.
0.46 66.8 Ta.22743.1.S1_x_at CA652933 - - 7e+0 At4g12090 cornichon family protein S.X. H.G.
0.44 64.5 Ta.3132.1.S1_s_at BJ222897 - - 1e+1 At4g28280 unknown protein S.X. H.G.
0.44 64.5 Ta.7473.1.S1_at CD872898 - - 9e-3 At1g74800 galactosyltransferase family protein S.X. H.G.
0.43 62.2 Ta.21029.1.S1_at CA647347 - - 2e-1 At3g02000 ROXY1 S.X. H.G.
0.42 60.9 Ta.13302.1.S1_at BQ801428 - - 5e+0 At5g15060 - S.X. H.G.
0.41 59.6 Ta.28411.1.A1_at BQ162281 - - 3e-1 At4g37010 caltractin, putative / centrin, putative S.X. H.G.
0.38 54.7 Ta.7022.2.S1_at BF199967 - - 5e-1 At1g19320 pathogenesis-related thaumatin family protein S.X. H.G.
0.38 54.7 TaAffx.132026.1.A1_at CK205559 - - 5e+0 At5g13080 WRKY75 S.X. H.G.
0.36 51.9 Ta.1812.1.S1_at CA732920 - - 1e+0 At5g23680 sterile alpha motif (SAM) domain-containing protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
27.7 99.8 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
23.3 99.8 GSM138195 genotype J15 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
21.3 99.7 GSM138178 genotype A88 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
18.3 99.7 GSM138169 genotype B68 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
13.6 99.5 GSM138149 genotype F29 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
11.5 99.3 GSM138188 genotype F38a developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
11.0 99.3 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
10.3 99.2 GSM111178 genotype DH95 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
9.1 99.0 GSM138154 genotype H5 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
8.3 98.8 GSM138153 genotype G32 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e-1 36 TaAffx.25240.1.S1_at CA704029 - - 1e+0 At1g11700 unknown protein C.G. S.X.
0.05 6e-1 34 TaAffx.5384.1.S1_at CA712793 - - 2e+1 At5g65300 unknown protein C.G. S.X.
0.04 6e-1 34 TaAffx.23269.1.A1_at BJ285133 - - 2e-2 At4g22190 unknown protein C.G. S.X.
0.02 6e-1 34 TaAffx.105509.1.S1_at CA693929 - - 6e-1 At3g14595 unknown protein C.G. S.X.
0.02 6e-1 34 Ta.9494.1.S1_a_at CK199730 - - 1e-8 At1g53580 GLY3 (GLYOXALASE II 3) C.G. S.X.
0.03 6e-1 34 Ta.25578.1.S1_a_at AJ613729 - - 2e-3 At5g66070 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.03 6e-1 34 Ta.25578.1.S1_x_at AJ613729 - - 2e-3 At5g66070 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.01 6e-1 34 Ta.20760.1.S1_at CA600350 - - 2e-14 At1g65590 HEXO3 (BETA-HEXOSAMINIDASE 3) C.G. S.X.
0.03 6e-1 34 Ta.19463.1.S1_at CA652153 - - 2e+0 At1g20900 ESC (ESCAROLA) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 9e+0 30 Arabidopsis thaliana At3g07190 819906 - F:molecular_function unknown;P:intracellular protein transport;C:endomembrane system, integral to membrane, endoplasmic reticulum;MOBPFAV - - - C.G. S.X.
0.03 8e-1 34 Glycine max PsAffx.CL14Contig1_at PsAffx.CL14Contig1 - - 6e-6 At2g36160 40S ribosomal protein S14 (RPS14A) C.G. S.X.
0.05 7e-2 36 Hordeum vulgare Contig20670_at Contig20670 - - 1e+0 At5g01430 Got1-like family protein C.G. S.X.
0.07 7e-2 38 Oryza sativa OsAffx.7687.1.S1_at - - - 0 C.G. S.X.
0.04 1e+1 30 Populus trichocarpa PtpAffx.220700.1.S1_at pmrna37112 hypothetical protein - 1e+1 At5g01910 unknown protein C.G. S.X.
0.04 3e+0 30 Vitis vinifera 1615547_at CF511472 hypothetical protein LOC100242710 - 1e-9 At1g42960 - C.G. S.X.
0.05 9e-1 32 Zea mays ZmAffx.999.1.S1_at AI881222 hypothetical protein LOC100279401 - 5e-2 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage