Gene omics information

Query gene ID	Ta.16216.1.S1_s_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.37	53.0	Ta.16216.1.S1_s_at	CA602710	-	-	4e+0	At3g51260	PAD1 (20s proteasome alpha subunit pad1)	S.X.	H.G.	Please select
0.63	83.1	Ta.18704.1.S1_at	BT009605.1	-	-	3e-5	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	S.X.	H.G.	Please select
0.60	81.0	Ta.18704.1.S1_x_at	BT009605.1	-	-	3e-5	At5g53300	UBC10 (ubiquitin-conjugating enzyme 10)	S.X.	H.G.	Please select
0.53	74.9	Ta.21139.1.A1_at	CA722357	-	-	2e+1	At4g23895	pleckstrin homology (PH) domain-containing protein-related	S.X.	H.G.	Please select
0.40	58.4	Ta.25494.2.S1_a_at	CA638320	-	-	7e-5	At4g38470	protein kinase family protein	S.X.	H.G.	Please select
0.27	35.6	Ta.30706.1.S1_at	AY543532.1	expansin EXPA6	-	8e+0	At2g03090	ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
76.8	100.0	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
72.8	100.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
39.4	99.9	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
11.1	99.3	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
8.7	98.9	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
7.8	98.7	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
3.9	96.1	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.2	94.8	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.9	94.0	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.9	94.0	GSM324494	Si+ B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.69	2e-143	508	Ta.21109.1.A1_at	CD879835	-	-	4e+0	At3g51260	PAD1 (20s proteasome alpha subunit pad1)	C.G.	S.X.	Please select
0.20	2e-23	109	Ta.8837.1.S1_at	BQ162482	-	-	1e+0	At1g64355	unknown protein	C.G.	S.X.	Please select
0.09	2e-5	50	Ta.26775.1.A1_at	CD491126	-	-	2e-5	At3g43600	AAO2 (ALDEHYDE OXIDASE 2)	C.G.	S.X.	Please select
0.04	1e-2	40	Ta.13976.1.S1_a_at	BQ172016	-	-	4e+0	At5g23100	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	36	TaAffx.51508.1.S1_at	CA723135	-	-	1e+1	At5g39010	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	36	TaAffx.50424.1.S1_at	CA741264	-	-	3e-1	At3g07560	PEX13 (PEROXIN 13)	C.G.	S.X.	Please select
0.04	2e-1	36	TaAffx.112304.2.S1_x_at	CA619303	-	-	3e-1	At2g16850	PIP2	C.G.	S.X.	Please select
0.03	2e-1	36	TaAffx.112304.1.S1_s_at	CA622018	-	-	3e-10	At2g16850	PIP2	C.G.	S.X.	Please select
0.04	2e-1	36	TaAffx.112304.2.S1_at	CA619303	-	-	3e-1	At2g16850	PIP2	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At3g51260	824289	PAD1 (20s proteasome alpha subunit pad1)	20S proteosomal alpha subunits. Interacts with SnRK, SKP1/ASK1 during proteasomal binding of an SCF ubiquitin ligase.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	1e+0	34	Glycine max	PsAffx.C17000013_s_at	PsAffx.C17000013	-	-	2e+0	At3g15270	SPL5 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 5)	C.G.	S.X.	Please select
0.27	1e-26	119	Hordeum vulgare	Contig4919_at	Contig4919	-	-	6e+0	At5g06080	LBD33 (LOB DOMAIN-CONTAINING PROTEIN 33)	C.G.	S.X.	Please select
0.05	4e-1	36	Oryza sativa	Os07g0633900	9635.m04418	-	-	1e+0	At1g51400	photosystem II 5 kD protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	5e+0	32	Populus trichocarpa	PtpAffx.75615.1.A1_at	CV263263	-	-	1e+1	At5g56795	MT1B	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e+1	28	Vitis vinifera	1616621_at	CB973164	-	-	2e+0	At5g46310	WRKY family transcription factor	C.G.	S.X.	Please select
0.04	1e-1	36	Zea mays	ZmAffx.903.1.A1_at	AI770912	-	-	1e+1	At3g42310	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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