Gene omics information

Query gene ID	Ta.15405.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.15405.1.S1_at	CA484292	-	-	4e+0	At2g17975	zinc finger (Ran-binding) family protein	S.X.	H.G.	Please select
0.22	27.1	TaAffx.37969.1.S1_at	BJ256880	-	-	3e-2	At3g19400	cysteine proteinase, putative	S.X.	H.G.	Please select
0.14	15.8	TaAffx.111137.1.S1_at	CA647309	-	-	9e-1	At5g10730	binding / catalytic/ coenzyme binding	S.X.	H.G.	Please select
0.07	8.6	TaAffx.7846.1.S1_at	CA647264	-	-	2e+1	At5g15670	F-box family protein	S.X.	H.G.	Please select
0.04	5.8	TaAffx.105451.1.S1_at	CA734135	-	-	1e+0	At3g06730	thioredoxin family protein	S.X.	H.G.	Please select
0.03	4.7	Ta.3501.3.A1_at	CA658638	-	-	3e-1	At5g08330	TCP family transcription factor, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.5	99.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
19.0	99.7	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
18.4	99.7	GSM143520	Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
14.7	99.5	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.4	99.4	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
12.0	99.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.1	98.5	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.1	98.5	GSM143494	Jupateco_Lr34 (resistant), mock inoculated distal leaf, replication 2	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.5	98.3	GSM138149	genotype F29 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.3	98.2	GSM138188	genotype F38a developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.13	2e-14	79	Ta.224.1.S1_at	AF112966.1	chitinase IV precursor	-	1e-1	At3g54420	ATEP3	C.G.	S.X.	Please select
0.19	7e-14	77	Ta.2278.3.S1_x_at	CD490414	-	-	6e+0	At3g12500	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	C.G.	S.X.	Please select
0.13	3e-13	75	Ta.2278.2.S1_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	C.G.	S.X.	Please select
0.13	3e-13	75	Ta.2278.2.S1_a_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	C.G.	S.X.	Please select
0.13	3e-13	75	Ta.2278.2.S1_x_at	CK196331	-	-	5e-2	At3g47540	chitinase, putative	C.G.	S.X.	Please select
0.07	7e-11	67	Ta.2278.1.S1_x_at	CK199734	-	-	3e+0	At2g43590	chitinase, putative	C.G.	S.X.	Please select
0.12	7e-11	67	Ta.221.1.S1_at	AF112963.1	chitinase II precursor	-	5e-1	At1g54640	F-box family protein-related	C.G.	S.X.	Please select
0.06	2e-5	50	Ta.26340.1.A1_at	CK198901	-	-	4e-1	At4g01700	chitinase, putative	C.G.	S.X.	Please select
0.05	9e-1	34	Ta.5592.1.S1_at	BJ285949	-	-	2e-2	At2g43570	chitinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	4e+0	32	Arabidopsis thaliana	At2g17975	816309	zinc finger (Ran-binding) family protein	F:binding, zinc ion binding;P:biological_process unknown;C:intracellular;PMOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	5e+0	32	Glycine max	PsAffx.psMC007xI22f_at	PsAffx.psMC007xI22f	-	-	9e+0	At3g32160	unknown protein	C.G.	S.X.	Please select
0.21	6e-22	103	Hordeum vulgare	Contig4326_s_at	Contig4326	-	-	8e+0	At4g25370	Clp amino terminal domain-containing protein	C.G.	S.X.	Please select
0.15	6e-19	95	Oryza sativa	Os04g0493400	AB003194.1	-	Endochitinase A precursor (EC 3.2.1.14) (Seedchitinase A)	4e-2	At3g54420	ATEP3	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	PtpAffx.2522.3.A1_at	CV269821	hypothetical protein	-	6e-1	At3g18160	peroxin-3 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e-1	34	Vitis vinifera	1622843_s_at	CF212102	-	-	6e-2	At1g11785	unknown protein	C.G.	S.X.	Please select
0.21	9e-36	149	Zea mays	Zm.1595.1.S1_at	CD967190	endochitinase A	-	6e-1	At3g54420	ATEP3	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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