Gene omics information

Query gene ID	Ta.15268.1.S1_x_at
Gene name	alpha-gliadin /// alpha-gliadin /// alpha-gliadin /// pre-alpha-/beta-gliadin A-IV /// precursor protein (AA -20 to 287)
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.94	98.9	Ta.15268.1.S1_x_at	M11075.1	alpha-gliadin /// alpha-gliadin /// alpha-gliadin /// pre-alpha-/beta-gliadin A-IV /// precursor protein (AA -20 to 287)	-	3e+0	At5g53590	auxin-responsive family protein	S.X.	H.G.	Please select
0.50	72.4	Ta.27777.1.S2_s_at	BJ239761	avenin-like b precursor-like	-	8e-8	At3g13200	EMB2769 (EMBRYO DEFECTIVE 2769)	S.X.	H.G.	Please select
0.47	67.9	Ta.2446.2.S1_at	CD898174	precursor protein (AA -25 to 120)	-	6e+0	At2g11005	glycine-rich protein	S.X.	H.G.	Please select
0.45	65.2	Ta.2446.1.S1_x_at	CD900024	-	-	2e+0	At1g27970	NTF2B (NUCLEAR TRANSPORT FACTOR 2B)	S.X.	H.G.	Please select
0.44	64.5	Ta.1315.1.S1_at	AJ223492.1	monomeric alpha-amylase inhibitor	-	7e+0	At5g24250	unknown protein	S.X.	H.G.	Please select
0.38	54.7	Ta.23142.4.S1_s_at	BJ241805	-	-	6e-1	At4g31580	SRZ-22	S.X.	H.G.	Please select
0.33	46.9	Ta.24114.8.S1_at	BJ238810	-	-	7e-1	At3g13810	AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11)	S.X.	H.G.	Please select
0.29	39.2	Ta.23142.5.S1_x_at	CD868513	low molecular weight glutenin	-	4e-2	At2g30590	WRKY21	S.X.	H.G.	Please select
0.25	32.1	Ta.24114.8.S1_x_at	BJ238810	Gamma-gliadin	-	7e-1	At3g13810	AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
141.9	100.0	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
112.7	100.0	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
110.9	100.0	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
1.2	80.3	GSM315202	target strand labeled: Sense - rep1	GSE12528	Wheat "Chinese Spring" natural antisense transcription survey
0.7	68.2	GSM111208	genotype F36 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
0.2	46.5	GSM138137	Genotype Domain developing seed at 5 days after anthesis, biological rep3 location SB	GSE5937	Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
0.0	30.7	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
0.0	30.7	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
0.0	30.7	GSM314286	tissue type: 22 DAP embryo - rep3	GSE12508	Transcription patterns during wheat development
0.0	30.7	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.21	0	706	Ta.24114.6.S1_s_at	BT009016.1	Precursor protein (AA -20 to 287)	-	2e-2	At1g32900	starch synthase, putative	C.G.	S.X.	Please select
0.71	2e-167	589	Ta.24114.1.S1_x_at	M10092.1	pre-alpha-/beta-gliadin A-II	-	3e+0	At5g53590	auxin-responsive family protein	C.G.	S.X.	Please select
0.59	1e-150	533	Ta.27778.4.S1_x_at	BJ239559	Alpha-gliadin /// Alpha/beta-gliadin precursor	-	1e-1	At1g49010	myb family transcription factor	C.G.	S.X.	Please select
0.73	1e-150	533	Ta.24114.11.S1_x_at	BJ237788	Alpha/beta-gliadin precursor	-	3e+0	At5g53590	auxin-responsive family protein	C.G.	S.X.	Please select
0.65	1e-150	533	Ta.24114.15.A1_x_at	BJ240538	Alpha/beta-gliadin precursor	-	6e-1	At4g30070	LCR59 (Low-molecular-weight cysteine-rich 59)	C.G.	S.X.	Please select
0.72	2e-127	456	Ta.6699.1.S1_at	M11076.1	pre-alpha-/beta-gliadin A-III	-	2e-1	At1g49010	myb family transcription factor	C.G.	S.X.	Please select
0.51	2e-127	456	Ta.24114.18.S1_x_at	BJ239750	-	-	1e+0	At5g10520	RBK1 (Rop Binding protein Kinases 1)	C.G.	S.X.	Please select
0.68	3e-126	452	Ta.24114.10.S1_x_at	BJ242919	Pre-alpha-/beta-gliadin A-III	-	3e+0	At1g43850	SEU (seuss)	C.G.	S.X.	Please select
0.71	1e-125	450	Ta.27778.6.S1_x_at	BJ232514	Alpha/beta-gliadin precursor	-	4e-2	At1g49010	myb family transcription factor	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	34	Arabidopsis thaliana	At5g53590	835441	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PMOFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	9e-1	36	Glycine max	HgAffx.15990.1.S1_at	CB374152	-	-	4e+0	At2g34740	catalytic/ protein serine/threonine phosphatase	C.G.	S.X.	Please select
0.08	9e-11	67	Hordeum vulgare	Contig245_s_at	Contig245	-	-	2e+0	At4g16380	metal ion binding	C.G.	S.X.	Please select
0.02	1e+0	36	Oryza sativa	OsAffx.8602.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e+0	34	Populus trichocarpa	PtpAffx.249.633.A1_x_at	CV259819	-	-	1e-9	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	2e-1	36	Vitis vinifera	1615445_at	BQ794327	-	-	5e-3	At5g02380	MT2B (METALLOTHIONEIN 2B)	C.G.	S.X.	Please select
0.03	1e+0	34	Zea mays	Zm.6247.1.S1_at	AF371267.1	alpha zein 19kDa D1	-	5e-1	At5g62360	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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