Gene omics information

Query gene ID	Ta.14469.2.A1_a_at
Gene name	MADS-box transcription factor TaAGL16
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.14469.2.A1_a_at	CD374109	MADS-box transcription factor TaAGL16	-	2e-5	At3g61120	AGL13 (AGAMOUS-LIKE 13)	S.X.	H.G.	Please select
0.67	86.3	Ta.12700.1.S1_at	AB084577.1	MADS box transcription factor	-	3e-6	At2g42830	SHP2 (SHATTERPROOF 2)	S.X.	H.G.	Please select
0.67	86.3	Ta.14469.3.S1_a_at	BJ276784	MADS-box transcription factor TaAGL16	-	3e-5	At3g61120	AGL13 (AGAMOUS-LIKE 13)	S.X.	H.G.	Please select
0.61	82.0	Ta.13865.1.S1_at	AF543316.1	MADS box protein	-	3e-9	At5g15800	SEP1 (SEPALLATA1)	S.X.	H.G.	Please select
0.60	81.0	Ta.9527.1.S1_x_at	BJ254990	-	-	1e+1	At5g44420	PDF1.2	S.X.	H.G.	Please select
0.46	66.8	Ta.10348.1.S1_a_at	CD894807	-	-	6e+0	At5g57640	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
3.7	95.8	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.5	95.4	GSM111229	genotype B65 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.5	95.4	GSM314276	tissue type: pistil, before anthesis - rep2	GSE12508	Transcription patterns during wheat development
3.3	95.0	GSM111237	genotype F38b developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.2	94.8	GSM111189	genotype H9 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.2	94.8	GSM111218	genotype F29 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.1	94.5	GSM314277	tissue type: pistil, before anthesis - rep3	GSE12508	Transcription patterns during wheat development
3.1	94.5	GSM111223	genotype H5 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.0	94.3	GSM314282	tissue type: 3-5 DAP caryopsis - rep2	GSE12508	Transcription patterns during wheat development
2.9	94.0	GSM111221	genotype H23 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	2e-122	438	Ta.14469.3.S1_a_at	BJ276784	MADS-box transcription factor TaAGL16	-	3e-5	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select
0.16	7e-58	224	Ta.13865.1.S1_at	AF543316.1	MADS box protein	-	3e-9	At5g15800	SEP1 (SEPALLATA1)	C.G.	S.X.	Please select
0.14	2e-48	192	Ta.777.1.S1_at	AB007505.1	MADS box transcription factor	-	1e-5	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select
0.13	2e-33	143	Ta.25343.1.A1_at	CD374116	MADS-box transcription factor TaAGL7	-	1e-7	At2g45660	AGL20 (AGAMOUS-LIKE 20)	C.G.	S.X.	Please select
0.14	3e-29	129	TaAffx.143995.19.A1_at	AY188333	-	-	2e-2	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.14	3e-29	129	TaAffx.143995.19.S1_at	AY188333	MIKC-type MADS-box transcription factor WM19A	-	2e-2	At2g22540	SVP (SHORT VEGETATIVE PHASE)	C.G.	S.X.	Please select
0.17	5e-28	125	TaAffx.120063.1.S1_at	CF134093	MADS-box transcription factor TaAGL10	-	4e-7	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.19	5e-28	125	TaAffx.120063.2.S1_s_at	BJ245749	MADS-box transcription factor TaAGL10	-	3e-7	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.11	5e-28	125	Ta.27776.1.S1_at	BJ274612	MADS-box transcription factor TaAGL2	-	3e-12	At4g18960	AG (AGAMOUS)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	2e-5	50	Arabidopsis thaliana	At3g61120	825284	AGL13 (AGAMOUS-LIKE 13)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.15	1e-10	67	Glycine max	GmaAffx.70788.1.S1_at	AI959798	-	-	8e-35	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please select
0.55	2e-118	424	Hordeum vulgare	Contig2200_s_at	Contig2200	-	-	2e-3	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.25	1e-32	141	Oryza sativa	OsAffx.12827.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	8e-12	71	Populus trichocarpa	PtpAffx.207908.1.S1_at	pmrna15697	hypothetical protein	-	9e-36	At2g03710	SEP4 (SEPALLATA 4)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	4e-13	73	Vitis vinifera	1609046_at	CB971729	hypothetical protein LOC100256085	-	1e-13	At2g45650	AGL6 (AGAMOUS-LIKE 6)	C.G.	S.X.	Please select
0.27	5e-72	270	Zea mays	Zm.13833.1.A1_at	CF649598	Zea mays MADS6 /// Zea mays MADS7	-	4e-5	At3g61120	AGL13 (AGAMOUS-LIKE 13)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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