Gene omics information

Query gene ID	Ta.14225.3.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	98.2	Ta.14225.3.S1_at	CA647891	-	-	7e-2	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	S.X.	H.G.	Please select
0.80	92.2	TaAffx.128618.1.S1_at	BE586137	-	-	6e-1	At3g17730	anac057 (Arabidopsis NAC domain containing protein 57)	S.X.	H.G.	Please select
0.73	89.1	Ta.24301.1.A1_s_at	CA722368	-	-	4e+0	At5g59580	UGT76E1 (UDP-GLUCOSYL TRANSFERASE 76E1)	S.X.	H.G.	Please select
0.73	89.1	Ta.14183.1.S1_at	AY123421.1	hypothetical LOC543077	-	2e-3	At3g44890	RPL9 (RIBOSOMAL PROTEIN L9)	S.X.	H.G.	Please select
0.73	89.1	Ta.14225.1.S1_x_at	CK212724	-	-	1e-1	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	S.X.	H.G.	Please select
0.46	66.8	Ta.1452.2.S1_a_at	CA636575	-	-	4e-3	At1g48350	ribosomal protein L18 family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.0	99.8	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
21.2	99.7	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
19.5	99.7	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
15.3	99.6	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
12.1	99.4	GSM250899	TcLr34_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
10.1	99.2	GSM138207	genotype B11 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
9.7	99.1	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
7.5	98.6	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
6.6	98.3	GSM250896	Tc_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3	97.6	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	995	Ta.14225.3.S1_a_at	CA647891	-	-	7e-2	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	C.G.	S.X.	Please select
0.43	3e-115	414	Ta.14225.1.S1_at	CK212724	-	-	1e-1	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	C.G.	S.X.	Please select
0.43	3e-115	414	Ta.14225.1.S1_x_at	CK212724	-	-	1e-1	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	C.G.	S.X.	Please select
0.14	2e-8	59	Ta.14225.2.A1_at	CA628098	-	-	1e+0	At3g13780	-	C.G.	S.X.	Please select
0.09	1e-6	54	TaAffx.25465.1.S1_at	CA699574	-	-	4e+0	At2g33810	SPL3 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 3)	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.5363.1.S1_at	BJ311145	-	-	9e-1	At3g62090	PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2)	C.G.	S.X.	Please select
0.02	4e+0	32	TaAffx.84101.1.S1_at	CA644699	-	-	2e+0	At3g06950	tRNA pseudouridine synthase family protein	C.G.	S.X.	Please select
0.03	4e+0	32	Ta.9042.1.S1_at	CA610566	-	-	3e+0	At3g21980	receptor-like protein kinase-related	C.G.	S.X.	Please select
0.02	4e+0	32	Ta.1736.1.S1_a_at	CK159221	-	-	5e-17	At1g63780	IMP4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	7e-2	38	Arabidopsis thaliana	At5g54600	835549	50S ribosomal protein L24, chloroplast (CL24)	F:structural constituent of ribosome;P:translation;C:chloroplast stroma, chloroplast, large ribosomal subunit;BOMPF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.14	1e-7	57	Glycine max	Gma.1353.1.S1_at	CD393633	-	-	2e-12	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	C.G.	S.X.	Please select
0.35	1e-103	375	Hordeum vulgare	Contig6148_at	Contig6148	-	-	2e-3	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	C.G.	S.X.	Please select
0.28	2e-65	250	Oryza sativa	Os06g0683200	AK060024.1	-	50S ribosomal protein L24, chloroplast precursor(CL24)	3e-2	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-2	40	Populus trichocarpa	Ptp.6627.1.S1_at	CV245106	hypothetical protein	-	4e-17	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	5e+0	30	Vitis vinifera	1621750_at	CB971067	-	-	2e-1	At5g59050	unknown protein	C.G.	S.X.	Please select
0.28	7e-68	256	Zea mays	Zm.5449.1.A1_at	CF636377	hypothetical protein LOC100273201	-	4e-1	At5g54600	50S ribosomal protein L24, chloroplast (CL24)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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