Gene omics information

Query gene ID	Ta.1406.1.S1_a_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.76	90.1	Ta.1406.1.S1_a_at	CK168374	-	-	2e-10	At1g07140	SIRANBP	S.X.	H.G.	Please select
0.78	91.1	Ta.28713.2.S1_at	CK170001	-	-	3e-5	At3g22230	60S ribosomal protein L27 (RPL27B)	S.X.	H.G.	Please select
0.78	91.1	Ta.27401.1.S1_s_at	BJ308508	60s ribosomal protein L21	-	3e-33	At1g09690	60S ribosomal protein L21 (RPL21C)	S.X.	H.G.	Please select
0.73	89.1	Ta.27117.2.S1_x_at	CD862365	-	-	2e-15	At2g40205	60S ribosomal protein L41 (RPL41C)	S.X.	H.G.	Please select
0.72	88.3	Ta.27377.2.S1_at	BJ320612	-	-	2e-64	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	S.X.	H.G.	Please select
0.70	87.2	Ta.28855.1.S1_at	CK216562	-	-	3e-9	At3g57490	40S ribosomal protein S2 (RPS2D)	S.X.	H.G.	Please select
0.70	87.2	Ta.1192.2.S1_s_at	BJ270766	Root abundant protein	-	2e-18	At4g27090	60S ribosomal protein L14 (RPL14B)	S.X.	H.G.	Please select
0.60	81.0	Ta.28365.1.S1_s_at	BE416744	-	-	5e-30	At3g09200	60S acidic ribosomal protein P0 (RPP0B)	S.X.	H.G.	Please select
0.47	67.9	Ta.23479.1.S1_a_at	CK160622	-	-	1e-47	At5g09510	40S ribosomal protein S15 (RPS15D)	S.X.	H.G.	Please select
0.46	66.8	Ta.27377.2.S1_x_at	BJ320612	-	-	2e-64	At3g52590	UBQ1 (UBIQUITIN EXTENSION PROTEIN 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.7	93.3	GSM111223	genotype H5 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.5	92.5	GSM111189	genotype H9 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.4	92.0	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.4	92.0	GSM111179	genotype DH95 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.4	92.0	GSM111175	genotype G30 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.4	92.0	GSM111247	genotype H10 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.3	91.5	GSM111146	genotype AC Domain developing seed at 5 days after anthesis, biological rep2	GSE4929	wheat expression level polymorphism study parental genotypes 2 biological reps
2.1	90.3	GSM138193	genotype B33 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.1	90.3	GSM138212	genotype C10 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.1	90.3	GSM138181	genotype A35 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.26	2e-66	254	Ta.5159.1.S1_at	BJ249986	Ran-binding protein	-	2e-4	At1g07140	SIRANBP	C.G.	S.X.	Please select
0.26	9e-62	238	TaAffx.85958.1.S1_at	CA618126	-	-	3e-10	At5g58590	RANBP1 (RAN BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.05	5e-5	50	TaAffx.58225.1.S1_at	CA621347	-	-	4e+0	At4g11820	MVA1	C.G.	S.X.	Please select
0.02	3e-3	44	Ta.9638.1.S1_at	CK216022	-	-	8e-3	At1g34350	unknown protein	C.G.	S.X.	Please select
0.03	1e-2	42	Ta.9638.2.S1_a_at	CA661653	-	-	1e-3	At1g34350	unknown protein	C.G.	S.X.	Please select
0.02	1e-2	42	Ta.23366.1.S1_x_at	BJ270611	-	-	1e+1	At5g17165	unknown protein	C.G.	S.X.	Please select
0.02	1e-2	42	Ta.23366.1.S1_at	BJ270611	-	-	1e+1	At5g17165	unknown protein	C.G.	S.X.	Please select
0.01	4e-2	40	Ta.9377.1.S1_at	CK201331	-	-	5e-31	At2g04030	CR88	C.G.	S.X.	Please select
0.02	4e-2	40	Ta.8660.1.S1_at	BT009576.1	-	-	1e-8	At2g32710	KRP4	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.09	2e-10	67	Arabidopsis thaliana	At1g07140	837225	SIRANBP	Encodes a putative Ran-binding protein (siRanBP).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	9e-1	36	Glycine max	PsAffx.CL46Contig1_at	PsAffx.CL46Contig1	-	-	2e+0	At5g15200	40S ribosomal protein S9 (RPS9B)	C.G.	S.X.	Please select
0.81	0	1039	Hordeum vulgare	Contig2439_at	Contig2439	-	-	4e-8	At1g07140	SIRANBP	C.G.	S.X.	Please select
0.42	1e-133	478	Oryza sativa	Os05g0350600	AK066244.1	-	Atranbp1b protein	4e-8	At1g07140	SIRANBP	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.02	4e+0	34	Populus trichocarpa	PtpAffx.63433.1.A1_at	CV241080	-	-	5e+0	At4g19095	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.15	4e-24	111	Vitis vinifera	1611797_at	CF208103	hypothetical protein LOC100257001	-	3e-38	At2g30060	Ran-binding protein 1b (RanBP1b)	C.G.	S.X.	Please select
0.35	6e-95	347	Zea mays	Zm.6165.1.A1_at	BG841141	ran-binding protein 1	-	2e-3	At1g07140	SIRANBP	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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