Gene omics information

Query gene ID	Ta.13966.2.S1_s_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	93.4	Ta.13966.2.S1_s_at	CK198271	-	-	2e-1	At5g09750	HEC3 (HECATE 3)	S.X.	H.G.	Please select
0.55	76.8	TaAffx.17013.2.S1_x_at	CA730181	-	-	1e+0	At4g10250	ATHSP22.0	S.X.	H.G.	Please select
0.50	72.4	Ta.7991.3.S1_at	CA705300	-	-	8e-1	At3g17980	C2 domain-containing protein	S.X.	H.G.	Please select
0.44	64.5	Ta.4674.1.S1_s_at	BJ269896	-	-	2e+0	At4g27140	2S seed storage protein 1 / 2S albumin storage protein / NWMU1-2S albumin 1	S.X.	H.G.	Please select
0.44	64.5	TaAffx.43678.1.S1_x_at	BF200239	-	-	9e+0	At2g40100	LHCB4.3 (light harvesting complex PSII)	S.X.	H.G.	Please select
0.40	58.4	Ta.7991.3.S1_x_at	CA705300	-	-	8e-1	At3g17980	C2 domain-containing protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.8	99.5	GSM138153	genotype G32 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
9.5	99.1	GSM138169	genotype B68 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.9	98.4	GSM138188	genotype F38a developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.9	98.4	GSM138195	genotype J15 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.7	98.4	GSM111236	genotype F38b developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
6.5	98.3	GSM138184	genotype C25 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.4	98.2	GSM138200	genotype F48 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.3	98.2	GSM138154	genotype H5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
6.1	98.1	GSM138162	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
5.5	97.8	GSM143521	Thatcher_Lr34 (susceptible), mock inoculated basal leaf, replication 1	GSE6227	Expression data from rust or mock inoculated, fully expanded flag leaf halves

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.10	7e-63	242	Ta.13966.1.S1_at	CA606157	-	-	7e-1	At1g28550	AtRABA1i (Arabidopsis Rab GTPase homolog A1i)	C.G.	S.X.	Please select
0.10	5e-39	163	Ta.13966.3.S1_a_at	CA639168	-	-	1e+0	At3g15670	late embryogenesis abundant protein, putative / LEA protein, putative	C.G.	S.X.	Please select
0.03	4e-9	63	Ta.7882.1.S1_x_at	BQ160849	-	-	2e+0	At4g16750	DRE-binding transcription factor, putative	C.G.	S.X.	Please select
0.03	4e-9	63	Ta.7882.1.S1_at	BQ160849	-	-	2e+0	At4g16750	DRE-binding transcription factor, putative	C.G.	S.X.	Please select
0.02	4e-9	63	Ta.28892.1.S1_s_at	CK198796	-	-	2e-11	At2g25070	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.02	6e-8	59	Ta.25574.1.S1_x_at	CD490451	-	-	9e+0	At3g01940	unknown protein	C.G.	S.X.	Please select
0.08	9e-7	56	TaAffx.31942.1.S1_at	CA604879	-	-	3e+0	At2g25250	unknown protein	C.G.	S.X.	Please select
0.03	9e-7	56	Ta.22927.1.S1_at	CK162179	-	-	9e-9	At3g20390	endoribonuclease L-PSP family protein	C.G.	S.X.	Please select
0.03	9e-7	56	Ta.22927.1.S1_s_at	CK162179	-	-	9e-9	At3g20390	endoribonuclease L-PSP family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	38	Arabidopsis thaliana	At5g09750	830835	HEC3 (HECATE 3)	F:transcription factor activity, DNA binding;P:transmitting tissue development, carpel formation, regulation of transcription;C:nucleus;POF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	2e-2	42	Glycine max	GmaAffx.56281.1.S1_at	BU761780	-	-	3e+0	At5g05590	PAI2 (PHOSPHORIBOSYLANTHRANILATE ISOMERASE 2)	C.G.	S.X.	Please select
0.37	5e-164	577	Hordeum vulgare	Contig22370_at	Contig22370	-	-	5e-3	At1g29160	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.54	0	785	Oryza sativa	Os03g0787000	AK065950.1	-	Syntaxin	1e-2	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-2	40	Populus trichocarpa	PtpAffx.95559.1.A1_at	CV241743	hypothetical protein	-	6e-15	At5g13480	FY	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	1e-2	40	Vitis vinifera	1616177_at	BQ800589	similar to 3-methyladenine DNA glycosylase, putative; 31680-30045	-	2e+1	At5g42630	ATS (ABERRANT TESTA SHAPE)	C.G.	S.X.	Please select
0.33	9e-110	397	Zea mays	Zm.9852.1.A1_at	BM381073	syntaxin 121	-	5e-3	At5g63740	zinc finger protein-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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