Gene omics information

Query gene ID	Ta.13937.1.A1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	89.4	Ta.13937.1.A1_at	BQ744333	-	-	5e+0	At1g26480	GRF12 (GENERAL REGULATORY FACTOR 12)	S.X.	H.G.	Please select
0.80	92.2	Ta.1708.1.A1_at	BE445919	-	-	3e-1	At5g50430	UBC33 (ubiquitin-conjugating enzyme 33)	S.X.	H.G.	Please select
0.65	83.9	Ta.20986.1.S1_x_at	CA641147	-	-	4e+0	At2g05440	glycine-rich protein	S.X.	H.G.	Please select
0.61	82.0	Ta.21115.2.S1_x_at	CA649749	-	-	2e-7	At5g40150	peroxidase, putative	S.X.	H.G.	Please select
0.61	82.0	Ta.18721.1.S1_at	CA641200	-	-	9e-1	At3g46080	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.58	79.2	Ta.16452.1.S1_at	CA606615	-	-	3e+0	At5g20790	unknown protein	S.X.	H.G.	Please select
0.58	79.2	TaAffx.56637.1.S1_at	CK215319	-	-	6e+0	At3g50260	CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1)	S.X.	H.G.	Please select
0.57	79.2	TaAffx.110993.1.A1_at	BJ284006	-	-	1e+0	At5g26740	unknown protein	S.X.	H.G.	Please select
0.55	76.8	TaAffx.64631.1.A1_at	BJ284527	-	-	5e+0	At5g24655	LSU4 (RESPONSE TO LOW SULFUR 4)	S.X.	H.G.	Please select
0.42	60.9	TaAffx.119224.1.A1_x_at	BJ282325	-	-	1e+0	At4g11290	peroxidase, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
90.1	100.0	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
89.0	100.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
34.5	99.9	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
15.2	99.6	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
13.9	99.5	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
12.6	99.4	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
9.9	99.1	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
7.1	98.5	GSM250895	Tc_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.2	97.5	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.28	2e-24	113	Ta.8880.1.A1_at	BQ162557	-	-	3e-1	At5g19175	-	C.G.	S.X.	Please select
0.03	4e-1	36	Ta.6742.1.A1_at	BJ273566	-	-	1e+0	At3g15357	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.23968.1.S1_at	CA727471	-	-	2e-1	At5g66000	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	34	Ta.25701.1.A1_at	CD373943	-	-	2e+0	At5g43430	ETFBETA	C.G.	S.X.	Please select
0.03	1e+0	34	Ta.15538.1.S1_at	CA486699	-	-	1e+0	At1g65980	TPX1 (thioredoxin-dependent peroxidase 1)	C.G.	S.X.	Please select
0.02	6e+0	32	TaAffx.92443.1.S1_at	BJ265992	-	-	5e+0	At3g61678	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	32	TaAffx.78446.1.S1_at	CA732409	-	-	3e-1	At1g21130	O-methyltransferase, putative	C.G.	S.X.	Please select
0.03	6e+0	32	TaAffx.65594.1.S1_at	BJ236677	-	-	1e+0	At5g43410	ethylene-responsive factor, putative	C.G.	S.X.	Please select
0.03	6e+0	32	TaAffx.64310.2.S1_at	BJ305933	-	-	1e+0	At2g04025	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At1g26480	839189	GRF12 (GENERAL REGULATORY FACTOR 12)	14-3-3 protein GF14iota (grf12)	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e+0	34	Glycine max	GmaAffx.87880.2.S1_at	BE805550	-	-	1e-2	At1g15280	glycine-rich protein	C.G.	S.X.	Please select
0.03	3e+0	32	Hordeum vulgare	Contig17937_at	Contig17937	-	-	6e+0	At4g36110	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.05	2e-1	38	Oryza sativa	OsAffx.26641.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e-1	38	Populus trichocarpa	PtpAffx.207277.1.S1_at	pmrna14440	hypothetical protein	-	2e+0	At4g11510	RALFL28 (ralf-like 28)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.03	3e-2	38	Vitis vinifera	1622620_at	BQ798306	hypothetical protein LOC100258795	-	5e-10	At5g61730	ATATH11	C.G.	S.X.	Please select
0.03	2e+0	32	Zea mays	Zm.15324.1.A1_at	CB350660	-	-	4e-3	At4g24230	ACBP3 (ACYL-COA-BINDING DOMAIN 3)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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