Gene omics information

Query gene ID	Ta.13897.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.1	Ta.13897.1.S1_at	BQ743308	-	-	1e+0	At5g57440	GS1	S.X.	H.G.	Please select
0.82	92.7	Ta.20986.1.S1_x_at	CA641147	-	-	4e+0	At2g05440	glycine-rich protein	S.X.	H.G.	Please select
0.73	89.1	Ta.13937.1.A1_at	BQ744333	-	-	5e+0	At1g26480	GRF12 (GENERAL REGULATORY FACTOR 12)	S.X.	H.G.	Please select
0.69	86.9	Ta.14311.1.A1_at	BU099716	-	-	1e-3	At2g41660	MIZ1 (mizu-kussei 1)	S.X.	H.G.	Please select
0.69	86.9	Ta.1708.1.A1_at	BE445919	-	-	3e-1	At5g50430	UBC33 (ubiquitin-conjugating enzyme 33)	S.X.	H.G.	Please select
0.64	83.6	TaAffx.110993.1.A1_at	BJ284006	-	-	1e+0	At5g26740	unknown protein	S.X.	H.G.	Please select
0.56	78.6	Ta.19141.1.S1_at	CA647806	-	-	1e-1	At5g24120	SIGE (SIGMA FACTOR E)	S.X.	H.G.	Please select
0.51	73.0	TaAffx.56637.1.S1_at	CK215319	-	-	6e+0	At3g50260	CEJ1 (COOPERATIVELY REGULATED BY ETHYLENE AND JASMONATE 1)	S.X.	H.G.	Please select
0.50	72.4	Ta.18721.1.S1_at	CA641200	-	-	9e-1	At3g46080	zinc finger (C2H2 type) family protein	S.X.	H.G.	Please select
0.47	67.9	TaAffx.64631.1.A1_at	BJ284527	-	-	5e+0	At5g24655	LSU4 (RESPONSE TO LOW SULFUR 4)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
100.4	100.0	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
88.2	100.0	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
29.4	99.8	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
17.2	99.6	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
16.4	99.6	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
12.2	99.4	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
6.9	98.4	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0	97.4	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8	97.2	GSM250916	TcLr1_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.2	94.8	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.52	5e-77	287	TaAffx.64652.1.S1_at	BJ283237	-	-	5e+0	At2g11015	unknown protein	C.G.	S.X.	Please select
0.47	2e-51	202	TaAffx.111152.1.S1_x_at	CA647138	-	-	2e+0	At3g61530	PANB2	C.G.	S.X.	Please select
0.47	2e-51	202	TaAffx.111152.1.S1_at	CA647138	-	-	2e+0	At3g61530	PANB2	C.G.	S.X.	Please select
0.02	7e-2	38	Ta.26093.1.S1_at	BE428891	-	-	5e-8	At4g31410	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	36	TaAffx.85447.1.S1_at	CA622706	-	-	1e+1	At5g12840	NF-YA1 (NUCLEAR FACTOR Y, SUBUNIT A1)	C.G.	S.X.	Please select
0.04	3e-1	36	TaAffx.8397.1.S1_at	CA626111	-	-	7e-1	At3g55880	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	36	TaAffx.65732.1.A1_at	BJ230119	-	-	2e+0	At5g58412	-	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.91854.1.A1_at	BJ299615	-	-	1e+0	At1g54500	rubredoxin family protein	C.G.	S.X.	Please select
0.03	1e+0	34	TaAffx.58606.1.S1_at	CA618121	-	-	3e-1	At1g75030	ATLP-3	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	34	Arabidopsis thaliana	At5g57440	835849	GS1	a member of haloacid dehalogenase-like hydrolase family	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	1e-1	38	Glycine max	Gma.7645.1.A1_at	BU548980	-	-	8e-2	At5g23000	MYB37 (MYB DOMAIN PROTEIN 37)	C.G.	S.X.	Please select
0.03	1e-1	36	Hordeum vulgare	Contig22504_at	Contig22504	-	-	7e+0	At5g57150	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.04	4e-2	40	Oryza sativa	Os08g0515100	NM_188989.1	-	Sulfotransferase family protein	2e-3	At3g45080	sulfotransferase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-2	40	Populus trichocarpa	PtpAffx.204169.1.S1_at	pmrna8215	hypothetical protein	-	2e-1	Atcg00130	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	5e+0	30	Vitis vinifera	1617298_at	CF515871	-	-	4e+0	At3g02900	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Zea mays	Zm.906.1.S1_at	BF728599	-	-	9e-2	At5g38400	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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