Gene omics information

Query gene ID	Ta.13701.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	72.4	Ta.13701.1.S1_at	BQ280458	-	-	8e+0	At1g06680	PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)	S.X.	H.G.	Please select
0.42	60.9	TaAffx.7696.1.S1_at	CA652956	-	-	1e+0	At3g27360	histone H3	S.X.	H.G.	Please select
0.17	19.8	Ta.23059.2.S1_x_at	BJ233581	-	-	2e+1	At5g44570	unknown protein	S.X.	H.G.	Please select
0.12	13.3	Ta.7482.1.S1_at	CD871466	-	-	3e-3	At3g15260	protein phosphatase 2C, putative / PP2C, putative	S.X.	H.G.	Please select
0.11	12.4	Ta.30253.1.A1_at	BG906702	-	-	1e+1	At5g04340	ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6)	S.X.	H.G.	Please select
0.06	7.6	TaAffx.116106.1.S1_at	BE429815	-	-	6e+0	At1g44920	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.6	99.5	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
12.5	99.4	GSM314259	tissue type: germinating seed, embryo - rep3	GSE12508	Transcription patterns during wheat development
12.0	99.4	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
11.3	99.3	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
8.3	98.8	GSM314258	tissue type: germinating seed, embryo - rep2	GSE12508	Transcription patterns during wheat development
7.7	98.7	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
7.3	98.6	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9	98.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8	97.9	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.7	97.9	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.42	5e-72	272	Ta.13701.2.S1_x_at	CA688168	-	-	1e+1	At5g16440	IPP1 (ISOPENTENYL DIPHOSPHATE ISOMERASE 1)	C.G.	S.X.	Please select
0.25	1e-29	131	TaAffx.31577.1.S1_at	CA612720	-	-	3e+0	At1g73620	thaumatin-like protein, putative / pathogenesis-related protein, putative	C.G.	S.X.	Please select
0.12	3e-24	113	Ta.19582.1.S1_at	CA653649	-	-	3e+0	At2g43940	thiol methyltransferase, putative	C.G.	S.X.	Please select
0.11	1e-23	111	Ta.20986.1.S1_x_at	CA641147	-	-	4e+0	At2g05440	glycine-rich protein	C.G.	S.X.	Please select
0.06	4e-11	69	TaAffx.93451.1.S1_at	BJ210299	-	-	4e+0	At5g55190	RAN3 (RAN GTPASE 3)	C.G.	S.X.	Please select
0.07	2e-9	63	Ta.29307.1.A1_at	CK163859	-	-	1e+0	At4g26730	methyltransferase	C.G.	S.X.	Please select
0.07	2e-9	63	Ta.29307.1.A1_s_at	CK163859	-	-	1e+0	At4g26730	methyltransferase	C.G.	S.X.	Please select
0.07	9e-6	52	Ta.3373.2.S1_at	CA690731	-	-	2e+0	At4g21830	methionine sulfoxide reductase domain-containing protein / SeIR domain-containing protein	C.G.	S.X.	Please select
0.05	1e-4	48	Ta.15454.1.S1_at	CA484822	-	-	1e+1	At5g16530	PIN5 (PIN-FORMED 5)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e+0	32	Arabidopsis thaliana	At1g06680	837178	PSBP-1 (PHOTOSYSTEM II SUBUNIT P-1)	Encodes a 23 kD extrinsic protein that is part of photosystem II and participates in the regulation of oxygen evolution.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e-2	40	Glycine max	GmaAffx.2501.4.S1_at	AW102276	-	-	7e-1	At4g16830	nuclear RNA-binding protein (RGGA)	C.G.	S.X.	Please select
0.31	2e-79	295	Hordeum vulgare	Contig17006_at	Contig17006	-	-	2e+1	At5g61160	AACT1 (anthocyanin 5-aromatic acyltransferase 1)	C.G.	S.X.	Please select
0.42	5e-98	359	Oryza sativa	Os06g0710700	9634.m04843	-	Benzoyl coenzyme A: benzyl alcohol benzoyltransferase	1e+1	At5g03010	kelch repeat-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+1	32	Populus trichocarpa	PtpAffx.220561.1.S1_at	pmrna36965	hypothetical protein	-	4e-1	At1g61470	CCR4-NOT transcription complex protein, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	2e+0	32	Vitis vinifera	1622525_at	CF209955	-	-	4e+0	At1g64625	transcription factor	C.G.	S.X.	Please select
0.03	2e-1	36	Zea mays	Zm.16532.1.A1_a_at	BM074770	60S ribosomal protein L18a	-	5e-44	At2g34480	60S ribosomal protein L18A (RPL18aB)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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