Gene omics information

Query gene ID	Ta.1364.1.S1_at
Gene name	geranylgeranyl hydrogenase
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	89.4	Ta.1364.1.S1_at	BJ219908	geranylgeranyl hydrogenase	-	4e-6	At1g74470	geranylgeranyl reductase	S.X.	H.G.	Please select
0.90	94.8	Ta.27751.7.A1_x_at	BG908738	-	-	6e-25	At1g29910	CAB3 (CHLOROPHYLL A/B BINDING PROTEIN 3)	S.X.	H.G.	Please select
0.79	91.3	Ta.2752.2.S1_x_at	BE216923	-	-	6e-13	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	S.X.	H.G.	Please select
0.77	90.8	Ta.2752.3.S1_x_at	BJ266715	ribulosebisphosphate carboxylase small subunit	-	8e-12	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	S.X.	H.G.	Please select
0.69	86.9	Ta.24304.2.S1_a_at	CK212788	-	-	3e-1	At1g03130	PSAD-2 (photosystem I subunit D-2)	S.X.	H.G.	Please select
0.69	86.9	Ta.27728.1.S1_at	AF314182.2	triose phosphate translocator	-	3e-22	At5g46110	APE2 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2)	S.X.	H.G.	Please select
0.67	86.3	Ta.23411.1.S1_at	BJ272562	-	-	3e-57	At3g60750	transketolase, putative	S.X.	H.G.	Please select
0.67	86.3	Ta.506.1.S1_a_at	BJ265323	-	-	6e-48	At4g38970	fructose-bisphosphate aldolase, putative	S.X.	H.G.	Please select
0.67	86.3	Ta.1130.2.S1_x_at	CK212780	-	-	5e-26	At5g54270	LHCB3 (LIGHT-HARVESTING CHLOROPHYLL B-BINDING PROTEIN 3)	S.X.	H.G.	Please select
0.65	83.9	Ta.30727.1.S1_at	CD873777	-	-	1e-39	At5g01530	chlorophyll A-B binding protein CP29 (LHCB4)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.9	97.3	GSM324494	Si+ B+ rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.7	97.1	GSM324485	Si- B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.4	96.8	GSM324491	Si+ B- rep2	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.4	96.8	GSM324493	Si+ B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.3	96.7	GSM324486	Si- B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.3	96.7	GSM324495	Si+ B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.1	96.4	GSM324489	Si- B+ rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.7	95.8	GSM324492	Si+ B- rep3	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.5	95.4	GSM324484	Si- B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
3.4	95.2	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.07	8e-23	109	TaAffx.110454.1.S1_at	CA658769	-	-	2e+1	At3g46666	unknown protein	C.G.	S.X.	Please select
0.02	2e-8	61	Ta.769.1.S1_at	CD863929	-	-	4e+0	At1g56555	unknown protein	C.G.	S.X.	Please select
0.02	2e-8	61	Ta.6467.1.S1_a_at	CK194906	-	-	1e-35	At4g12590	unknown protein	C.G.	S.X.	Please select
0.02	2e-8	61	Ta.6467.1.S1_x_at	CK194906	-	-	1e-35	At4g12590	unknown protein	C.G.	S.X.	Please select
0.02	1e-6	56	TaAffx.43139.1.S1_at	CK214924	-	-	7e+0	At4g36660	unknown protein	C.G.	S.X.	Please select
0.02	1e-6	56	Ta.8558.1.S1_at	BQ280941	-	-	6e-1	At5g37140	tRNA-splicing endonuclease positive effector-related	C.G.	S.X.	Please select
0.02	1e-6	56	Ta.10426.1.A1_at	CK212973	-	-	2e+0	At5g65640	bHLH093 (beta HLH protein 93)	C.G.	S.X.	Please select
0.02	1e-6	56	Ta.10390.1.S1_at	CK168322	-	-	5e-5	At4g35350	XCP1 (XYLEM CYSTEINE PEPTIDASE 1)	C.G.	S.X.	Please select
0.02	4e-6	54	TaAffx.98930.1.A1_at	CK214676	CBFIIId-12.1 /// CBFIIId-B12	-	9e+0	At4g34700	complex 1 family protein / LVR family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	4e-6	54	Arabidopsis thaliana	At1g74470	843788	geranylgeranyl reductase	Encodes for a multifunctional protein with geranylgeranyl reductase activity shown to catalyze the reduction of prenylated geranylgeranyl-chlorophyll a to phytyl-chlorophyll a (chlorophyll a) and free geranylgeranyl pyrophosphate to phytyl pyrophosphate.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.29	3e-51	204	Glycine max	Gma.1279.1.S1_a_at	CD409598	-	-	5e-36	At1g74470	geranylgeranyl reductase	C.G.	S.X.	Please select
0.85	0	2714	Hordeum vulgare	Contig3183_s_at	Contig3183	-	-	4e-6	At1g74470	geranylgeranyl reductase	C.G.	S.X.	Please select
0.67	0	1733	Oryza sativa	Os02g0744900	AK098873.1	-	Geranylgeranyl hydrogenase	6e-5	At1g74470	geranylgeranyl reductase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	4e-7	57	Populus trichocarpa	PtpAffx.210506.1.S1_at	pmrna20610	hypothetical protein	-	1e-43	At1g74470	geranylgeranyl reductase	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.01	4e+0	32	Vitis vinifera	1611048_at	CB970151	hypothetical protein LOC100255990	-	2e-21	At4g32390	phosphate translocator-related	C.G.	S.X.	Please select
0.60	0	1104	Zea mays	Zm.3702.1.S1_at	AY104414.1	geranylgeranyl hydrogenase	-	6e-5	At1g74470	geranylgeranyl reductase	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage