CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.13194.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.60 81.0 Ta.13194.1.S1_at BJ266127 - - 4e-3 At3g29034 unknown protein S.X. H.G.
0.70 87.2 Ta.2429.2.S1_x_at CK215557 - - 5e+0 At1g27530 - S.X. H.G.
0.70 87.2 Ta.1381.2.S1_at BQ172233 - - 2e+0 At3g07480 electron carrier/ iron-sulfur cluster binding S.X. H.G.
0.64 83.6 Ta.2429.2.S1_a_at CK215557 - - 5e+0 At1g27530 - S.X. H.G.
0.64 83.6 Ta.28888.1.S1_at CA617384 - - 4e-5 At5g13510 ribosomal protein L10 family protein S.X. H.G.
0.64 83.6 Ta.1381.2.S1_x_at BQ172233 - - 2e+0 At3g07480 electron carrier/ iron-sulfur cluster binding S.X. H.G.
0.56 78.6 Ta.28895.1.S1_s_at AY217751.1 - - 2e-19 At5g13120 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein S.X. H.G.
0.55 76.8 Ta.13250.2.S1_x_at CK158867 - - 7e-4 At5g20720 CPN20 (CHAPERONIN 20) S.X. H.G.
0.54 75.5 Ta.13731.1.S1_at AY217753.1 - - 6e-29 At5g13120 peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein S.X. H.G.
0.54 75.5 Ta.4910.1.S1_at BJ228955 - - 3e-13 At5g63570 GSA1 (GLUTAMATE-1-SEMIALDEHYDE-2,1-AMINOMUTASE) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
5.7 97.9 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.3 97.6 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.1 97.5 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
5.0 97.4 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.0 97.4 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.5 96.9 GSM324493 Si+ B+ rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.3 96.7 GSM343678 Wheat var. Kennedy_control_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.3 96.7 GSM343687 Wheat var. Kennedy_Fp inoculated_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.2 96.6 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.2 96.6 GSM324492 Si+ B- rep3 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-5 50 Ta.25905.1.A1_at CD454255 - - 2e-2 At5g27690 heavy-metal-associated domain-containing protein C.G. S.X.
0.05 7e-5 48 TaAffx.6223.1.S1_at CA689767 - - 4e-3 At5g27690 heavy-metal-associated domain-containing protein C.G. S.X.
0.05 7e-5 48 Ta.2927.1.S1_s_at BJ207394 GA-induced protein - 2e-2 At3g10185 - C.G. S.X.
0.06 3e-4 46 Ta.29551.1.A1_at CA719367 - - 4e-3 At5g27520 PNC2 (PEROXISOMAL ADENINE NUCLEOTIDE CARRIER 2) C.G. S.X.
0.04 1e-3 44 TaAffx.83745.2.S1_at CA652399 - - 4e-3 At4g29240 leucine-rich repeat family protein / extensin family protein C.G. S.X.
0.02 5e-3 42 TaAffx.38429.1.S1_at BJ238520 - - 2e-7 At3g06200 guanylate kinase, putative C.G. S.X.
0.02 5e-3 42 TaAffx.102809.1.S1_at CK161865 - - 2e-16 At1g63050 membrane bound O-acyl transferase (MBOAT) family protein C.G. S.X.
0.05 5e-3 42 Ta.12877.1.S1_at CA486441 - - 2e+1 At5g12990 CLE40 (CLAVATA3/ESR-RELATED 40) C.G. S.X.
0.05 2e-2 40 TaAffx.9214.1.S1_at CA607398 - - 8e-1 At2g22540 SVP (SHORT VEGETATIVE PHASE) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e-3 42 Arabidopsis thaliana At3g29034 822546 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P - - - C.G. S.X.
0.05 2e-2 40 Glycine max GmaAffx.93061.1.S1_at CF808786 - - 5e-6 At3g19130 ATRBP47B (RNA-binding protein 47B) C.G. S.X.
0.71 2e-167 587 Hordeum vulgare Contig14330_at Contig14330 - - 6e-3 At3g29034 unknown protein C.G. S.X.
0.16 8e-28 125 Oryza sativa Os02g0152900 AK061136.1 - Hypothetical protein 2e-3 At1g75550 glycine-rich protein C.G. S.X.
0.07 1e-1 38 Populus trichocarpa PtpAffx.224082.1.S1_x_at pmrna42319 hypothetical protein - 1e-2 At5g61030 GR-RBP3 (glycine-rich RNA-binding protein 3) C.G. S.X.
0.07 8e-2 36 Vitis vinifera 1616806_at CF605749 hypothetical protein LOC100259004 - 6e-2 At2g01340 unknown protein C.G. S.X.
0.36 1e-75 282 Zea mays Zm.1240.1.A1_at AI001233 hypothetical protein LOC100274890 - 6e-3 At3g29034 unknown protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage