Gene omics information

Query gene ID	Ta.1305.2.S1_x_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	83.1	Ta.1305.2.S1_x_at	BJ291943	-	-	9e-60	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	S.X.	H.G.	Please select
0.39	56.1	Ta.4062.1.S1_x_at	CA703978	-	-	2e-1	At4g38420	sks9 (SKU5 Similar 9)	S.X.	H.G.	Please select
0.33	46.9	Ta.1305.1.S1_a_at	CK154793	-	-	2e-65	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	S.X.	H.G.	Please select
0.25	32.1	Ta.1305.1.S1_x_at	CK154793	-	-	2e-65	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	S.X.	H.G.	Please select
0.24	30.3	Ta.21349.2.S1_x_at	CA613683	-	-	2e+0	At4g30260	integral membrane Yip1 family protein	S.X.	H.G.	Please select
0.20	24.0	Ta.28355.1.S1_x_at	CA722170	-	-	5e-19	At5g43940	HOT5 (sensitive to hot temperatures 5)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
4.3	96.7	GSM111187	genotype B68 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.8	96.0	GSM111186	genotype B68 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.6	95.6	GSM314283	tissue type: 3-5 DAP caryopsis - rep3	GSE12508	Transcription patterns during wheat development
3.5	95.4	GSM111223	genotype H5 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.5	95.4	GSM111192	genotype F38a developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.3	95.0	GSM314281	tissue type: 3-5 DAP caryopsis - rep1	GSE12508	Transcription patterns during wheat development
3.2	94.8	GSM111176	genotype E5 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.2	94.8	GSM111246	genotype H10 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.2	94.8	GSM111234	genotype F44 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.2	94.8	GSM111215	genotype C58 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.64	0	866	Ta.1305.1.S1_at	CK154793	-	-	2e-65	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	C.G.	S.X.	Please select
0.64	0	866	Ta.1305.1.S1_a_at	CK154793	-	-	2e-65	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	C.G.	S.X.	Please select
0.64	0	866	Ta.1305.1.S1_x_at	CK154793	-	-	2e-65	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	C.G.	S.X.	Please select
0.70	1e-169	595	Ta.1305.3.S1_at	CA641627	-	-	7e-45	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	C.G.	S.X.	Please select
0.70	1e-169	595	Ta.1305.3.S1_x_at	CA641627	-	-	7e-45	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	C.G.	S.X.	Please select
0.22	3e-78	291	TaAffx.9432.1.A1_at	CA598967	-	-	3e-15	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	C.G.	S.X.	Please select
0.22	3e-78	291	TaAffx.9432.1.A1_x_at	CA598967	-	-	3e-15	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	C.G.	S.X.	Please select
0.37	6e-67	254	Ta.26438.1.S1_at	CA486830	-	-	2e-46	At1g26630	FBR12 (FUMONISIN B1-RESISTANT12)	C.G.	S.X.	Please select
0.32	8e-51	200	Ta.12886.1.S1_at	CA502568	-	-	7e-34	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.67	9e-60	230	Arabidopsis thaliana	At1g13950	837955	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.61	6e-71	268	Glycine max	Gma.6129.2.S1_s_at	AW186006	-	-	1e-34	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	C.G.	S.X.	Please select
0.69	0	783	Hordeum vulgare	Contig2581_at	Contig2581	-	-	2e-68	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	C.G.	S.X.	Please select
0.52	2e-133	476	Oryza sativa	Os12g0507200	AK099039.1	-	Eukaryotic translation initiation factor 5A-2(eIF-5A) (eIF-4D)	9e-49	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.48	8e-61	234	Populus trichocarpa	PtpAffx.249.122.S1_at	CV276086	hypothetical protein	-	1e-41	At1g69410	ELF5A-3 (EUKARYOTIC ELONGATION FACTOR 5A-3)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.54	2e-73	274	Vitis vinifera	1607236_at	CF206372.1	-	-	2e-46	At1g13950	ELF5A-1 (EUKARYOTIC ELONGATION FACTOR 5A-1)	C.G.	S.X.	Please select
0.41	2e-74	278	Zea mays	Zm.761.1.S1_at	CF053892	hypothetical protein LOC100192991	-	6e-37	At1g26630	FBR12 (FUMONISIN B1-RESISTANT12)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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