Gene omics information

Query gene ID	Ta.13009.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	83.1	Ta.13009.1.S1_at	CA485346	-	-	5e+0	At5g43620	S-locus protein-related	S.X.	H.G.	Please select
0.33	46.9	Ta.17435.1.S1_at	CA620845	-	-	7e+0	At4g22210	LCR85 (Low-molecular-weight cysteine-rich 85)	S.X.	H.G.	Please select
0.32	44.4	TaAffx.24773.1.S1_at	CA712591	-	-	1e+1	At5g14660	PDF1B (PEPTIDE DEFORMYLASE 1B)	S.X.	H.G.	Please select
0.26	33.6	Ta.4063.3.S1_s_at	CA732547	-	-	8e-1	At5g66570	PSBO1 (PS II OXYGEN-EVOLVING COMPLEX 1)	S.X.	H.G.	Please select
0.23	29.0	TaAffx.58161.1.S1_at	CA621887	-	-	3e+0	At5g67070	RALFL34 (ralf-like 34)	S.X.	H.G.	Please select
0.16	18.2	TaAffx.65462.1.S1_at	BJ245082	-	-	9e-1	At3g18300	unknown protein	S.X.	H.G.	Please select
0.12	13.3	TaAffx.31791.1.S1_at	CA607567	-	-	7e-1	At5g26717	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
10.6	99.2	GSM298067	Leaf tissue of Paragon at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
9.6	99.1	GSM298092	Crown tissue of Solstice at 3 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
9.6	99.1	GSM111233	genotype H8 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
8.9	99.0	GSM250898	TcLr1_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.5	98.3	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9	98.0	GSM298090	Leaf tissue of Solstice at 5 weeks post germination	GSE11774	Expression data from cold treated wheat cultivars
3.5	95.4	GSM111232	genotype H8 developing seed at 5 days after anthesis, biological rep1	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
3.3	95.0	GSM138190	genotype D39 developing seed at 5 days after anthesis, biological rep1	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
3.3	95.0	GSM138157	genotype DH91 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9	94.0	GSM250897	TcLr1_3dpi_mock_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.19	4e-59	228	Ta.5541.1.S1_at	CD373605	-	-	1e+0	At1g07900	LBD1 (LOB DOMAIN-CONTAINING PROTEIN 1)	C.G.	S.X.	Please select
0.19	4e-59	228	Ta.5541.1.S1_a_at	CD373605	-	-	1e+0	At1g07900	LBD1 (LOB DOMAIN-CONTAINING PROTEIN 1)	C.G.	S.X.	Please select
0.35	5e-43	174	Ta.5541.3.S1_at	BJ242729	-	-	4e+0	At4g27530	unknown protein	C.G.	S.X.	Please select
0.36	5e-34	145	TaAffx.3444.1.S1_at	BQ801852	-	-	2e-6	At1g02080	transcriptional regulator-related	C.G.	S.X.	Please select
0.23	3e-10	65	Ta.5541.2.S1_x_at	CA654080	-	-	1e+0	At1g76420	CUC3 (CUP SHAPED COTYLEDON3)	C.G.	S.X.	Please select
0.23	3e-10	65	Ta.5541.2.S1_at	CA654080	-	-	1e+0	At1g76420	CUC3 (CUP SHAPED COTYLEDON3)	C.G.	S.X.	Please select
0.03	5e+0	32	TaAffx.56762.1.S1_at	CA644935	-	-	1e+0	At5g42895	-	C.G.	S.X.	Please select
0.02	5e+0	32	TaAffx.401.1.A1_at	CD492249	-	-	6e+0	At5g09960	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	32	TaAffx.38742.1.S1_at	BJ220257	-	-	4e-1	At4g31010	RNA binding	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	5e+0	32	Arabidopsis thaliana	At5g43620	834382	S-locus protein-related	F:zinc ion binding;P:biological_process unknown;C:intracellular;MFOP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e-7	56	Glycine max	GmaAffx.44143.1.S1_at	BU547730	-	-	2e-16	At1g02080	transcriptional regulator-related	C.G.	S.X.	Please select
0.20	9e-74	276	Hordeum vulgare	Contig9348_at	Contig9348	-	-	2e-5	At1g02080	transcriptional regulator-related	C.G.	S.X.	Please select
0.07	6e-38	159	Oryza sativa	Os03g0102300	9631.m00026	-	CCR4-Not complex component, Not1 family protein	8e-13	At1g02080	transcriptional regulator-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.13	1e-1	38	Populus trichocarpa	PtpAffx.11426.1.A1_at	CV263606	hypothetical protein	-	9e-15	At1g02080	transcriptional regulator-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	9e-5	46	Vitis vinifera	1617532_at	CF511414	hypothetical protein LOC100256945	-	3e-10	At1g02080	transcriptional regulator-related	C.G.	S.X.	Please select
0.52	5e-177	619	Zea mays	Zm.7360.1.A1_at	CK827608	hypothetical protein LOC100273922	-	3e-27	At1g02080	transcriptional regulator-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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