Gene omics information

Query gene ID	Ta.12870.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	86.3	Ta.12870.1.S1_at	BJ322687	-	-	8e-52	At1g04480	60S ribosomal protein L23 (RPL23A)	S.X.	H.G.	Please select
0.78	91.1	Ta.28317.1.S1_x_at	BQ806898	-	-	9e-12	At1g33120	60S ribosomal protein L9 (RPL90B)	S.X.	H.G.	Please select
0.67	86.3	Ta.24826.3.S1_at	BJ263115	-	-	8e-34	At2g34480	60S ribosomal protein L18A (RPL18aB)	S.X.	H.G.	Please select
0.67	86.3	Ta.22961.1.S1_a_at	BJ299675	-	-	3e-20	At2g32060	40S ribosomal protein S12 (RPS12C)	S.X.	H.G.	Please select
0.63	83.1	Ta.2605.2.S1_at	BJ226329	-	-	1e-16	At3g47370	40S ribosomal protein S20 (RPS20B)	S.X.	H.G.	Please select
0.61	82.0	Ta.24826.3.S1_x_at	BJ263115	-	-	8e-34	At2g34480	60S ribosomal protein L18A (RPL18aB)	S.X.	H.G.	Please select
0.61	82.0	Ta.28713.1.S1_at	CD927880	-	-	7e-9	At3g22230	60S ribosomal protein L27 (RPL27B)	S.X.	H.G.	Please select
0.58	79.2	Ta.1335.1.S1_at	BQ842066	-	-	4e-85	At5g02960	40S ribosomal protein S23 (RPS23B)	S.X.	H.G.	Please select
0.58	79.2	Ta.14324.1.S1_x_at	CA726094	-	-	1e-1	At3g53890	40S ribosomal protein S21 (RPS21B)	S.X.	H.G.	Please select
0.57	79.2	Ta.1335.1.S1_x_at	BQ842066	-	-	4e-85	At5g02960	40S ribosomal protein S23 (RPS23B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
2.3	91.5	GSM139916	Anther leptotene-pachytene rep1	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.3	91.5	GSM138183	genotype A10 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.2	91.0	GSM314281	tissue type: 3-5 DAP caryopsis - rep1	GSE12508	Transcription patterns during wheat development
2.2	91.0	GSM138163	genotype E5 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.2	91.0	GSM138173	genotype DH95 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.2	91.0	GSM139917	Anther leptotene-pachytene rep2	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
2.2	91.0	GSM314283	tissue type: 3-5 DAP caryopsis - rep3	GSE12508	Transcription patterns during wheat development
2.2	91.0	GSM111179	genotype DH95 developing seed at 5 days after anthesis, biological rep2	GSE4935	wheat expression level polymorphism study 39 genotypes 2 biological reps
2.1	90.3	GSM314270	tissue type: immature inflorescence - rep2	GSE12508	Transcription patterns during wheat development
2.1	90.3	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.56	3e-153	541	Ta.24302.1.S1_at	CA617320	-	-	2e-69	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select
0.50	4e-146	517	Ta.1831.2.S1_x_at	CK212818	-	-	2e-54	At2g33370	60S ribosomal protein L23 (RPL23B)	C.G.	S.X.	Please select
0.43	1e-136	486	Ta.1831.1.S1_x_at	CK151973	-	-	1e-56	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select
0.52	8e-126	450	Ta.1831.3.S1_x_at	CA642128	-	-	2e-35	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select
0.52	8e-126	450	Ta.1831.3.S1_at	CA642128	-	-	2e-35	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select
0.38	9e-98	357	Ta.14635.3.S1_x_at	BJ231529	Ribosomal Pr 117	-	4e-88	At2g33370	60S ribosomal protein L23 (RPL23B)	C.G.	S.X.	Please select
0.56	9e-95	347	Ta.14635.1.S1_a_at	AF479048.1	ribosomal Pr 117	-	9e-81	At2g33370	60S ribosomal protein L23 (RPL23B)	C.G.	S.X.	Please select
0.38	1e-81	303	Ta.14635.2.S1_a_at	BJ225605	Ribosomal Pr 117	-	1e-75	At2g33370	60S ribosomal protein L23 (RPL23B)	C.G.	S.X.	Please select
0.51	2e-62	240	TaAffx.110479.1.S1_at	CA658548	-	-	1e-8	At2g33370	60S ribosomal protein L23 (RPL23B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.51	8e-52	204	Arabidopsis thaliana	At1g04480	839511	60S ribosomal protein L23 (RPL23A)	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOPMAF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.47	2e-99	363	Glycine max	GmaAffx.90040.1.A1_at	CF805864	-	-	2e-88	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select
0.72	0	801	Hordeum vulgare	Contig1910_at	Contig1910	-	-	6e-52	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select
0.44	8e-41	169	Oryza sativa	Os02g0814700	AK121994.1	-	60S ribosomal protein L17 [Oryza sativa (japonicacultivar-group)]	4e-78	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.42	9e-37	155	Populus trichocarpa	PtpAffx.993.2.S1_s_at	BU835787	hypothetical protein	-	2e-101	At3g04400	emb2171 (embryo defective 2171)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.43	4e-69	260	Vitis vinifera	1607660_at	CA812263	similar to ribosomal protein L17	-	6e-80	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select
0.48	6e-165	579	Zea mays	Zm.12634.1.A1_x_at	CF048221	hypothetical protein LOC100194224 /// 60S ribosomal protein L23 /// 60S ribosomal protein L23	-	1e-56	At1g04480	60S ribosomal protein L23 (RPL23A)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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