Gene omics information

Query gene ID	Ta.12797.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	93.4	Ta.12797.1.S1_at	CA652314	-	-	4e-4	At5g60460	sec61beta family protein	S.X.	H.G.	Please select
0.50	72.4	Ta.12797.1.S1_x_at	CA652314	-	-	4e-4	At5g60460	sec61beta family protein	S.X.	H.G.	Please select
0.29	39.2	Ta.13749.1.S1_x_at	CD870298	-	-	2e-4	At1g60740	peroxiredoxin type 2, putative	S.X.	H.G.	Please select
0.03	4.7	Ta.28745.1.S1_x_at	CK200152	-	-	2e-14	At1g01090	PDH-E1 ALPHA (PYRUVATE DEHYDROGENASE E1 ALPHA)	S.X.	H.G.	Please select
0.03	4.7	Ta.30750.1.S1_at	BJ227447	-	-	7e-4	At5g56020	-	S.X.	H.G.	Please select
0.03	4.7	TaAffx.129513.2.A1_x_at	BJ306606	-	-	5e-18	At1g07890	APX1 (ascorbate peroxidase 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.0	97.4	GSM314260	tissue type: seedling, root - rep1	GSE12508	Transcription patterns during wheat development
4.9	97.3	GSM314261	tissue type: seedling, root - rep2	GSE12508	Transcription patterns during wheat development
4.4	96.8	GSM314262	tissue type: seedling, root - rep3	GSE12508	Transcription patterns during wheat development
4.1	96.4	GSM139918	Anther leptotene-pachytene rep3	GSE6027	Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.4	95.2	GSM314254	tissue type: germinating seed, root - rep1	GSE12508	Transcription patterns during wheat development
3.0	94.3	GSM314256	tissue type: germinating seed, root - rep3	GSE12508	Transcription patterns during wheat development
2.8	93.6	GSM324487	Si- B+ rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
2.8	93.6	GSM250900	TcLr34_3dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
2.8	93.6	GSM314255	tissue type: germinating seed, root - rep2	GSE12508	Transcription patterns during wheat development
2.7	93.3	GSM138205	genotype H8 developing seed at 5 days after anthesis, biological rep3	GSE5939	Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.83	0	823	Ta.12797.1.S1_x_at	CA652314	-	-	4e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.28	4e-66	252	Ta.13162.1.S1_at	CK200289	-	-	5e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.04	8e-15	81	Ta.7457.1.S1_at	CK166374	-	-	3e+0	Atmg01260	-	C.G.	S.X.	Please select
0.05	3e-14	79	Ta.16319.1.S1_x_at	CK216317	-	-	2e+0	At4g28360	ribosomal protein L22 family protein	C.G.	S.X.	Please select
0.05	1e-13	77	Ta.19774.1.S1_at	BE216927	-	-	1e-1	At4g38580	ATFP6 (FARNESYLATED PROTEIN 6)	C.G.	S.X.	Please select
0.05	2e-12	73	TaAffx.16936.1.S1_at	CK216481	fasciclin-like protein FLA16 /// fasciclin-like protein FLA17	-	2e+0	At3g54560	HTA11	C.G.	S.X.	Please select
0.04	2e-12	73	Ta.7266.1.S1_at	CK199580	-	-	3e-3	At5g47390	myb family transcription factor	C.G.	S.X.	Please select
0.06	2e-12	73	Ta.5511.1.S1_at	CK215160	-	-	3e+1	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	C.G.	S.X.	Please select
0.06	2e-12	73	Ta.21086.1.S1_a_at	CD864763	-	-	4e-38	At2g20930	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.08	4e-4	46	Arabidopsis thaliana	At5g60460	836167	sec61beta family protein	F:protein transporter activity;P:protein transport;C:plasma membrane;MFPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-16	87	Glycine max	Gma.5350.1.S1_s_at	AW351218	-	-	6e-18	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.55	4e-160	563	Hordeum vulgare	HS08H05u_at	HS08H05u	-	-	2e-4	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.24	3e-46	186	Oryza sativa	Os12g0103300	AU222596	-	Protein transport protein SEC61 beta subunit	4e-3	At5g60460	sec61beta family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e+0	34	Populus trichocarpa	PtpAffx.85349.1.S1_at	DN502101	-	-	1e+0	At2g31700	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	5e-10	63	Vitis vinifera	1620903_at	CF605711	hypothetical protein LOC100260422	-	2e-12	At5g60460	sec61beta family protein	C.G.	S.X.	Please select
0.23	8e-50	196	Zea mays	Zm.15216.1.A1_at	BM335032	protein transport protein Sec61 beta subunit	-	2e-2	At5g60460	sec61beta family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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