Gene omics information

Query gene ID	Ta.12796.1.S1_s_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	83.1	Ta.12796.1.S1_s_at	BE430492	-	-	8e-16	At5g01990	auxin efflux carrier family protein	S.X.	H.G.	Please select
0.43	62.2	Ta.12796.2.S1_s_at	CA628522	-	-	2e-3	At5g56550	OXS3 (OXIDATIVE STRESS 3)	S.X.	H.G.	Please select
0.40	58.4	Ta.16999.1.S1_x_at	CA648819	-	-	8e-6	At1g14290	SBH2 (SPHINGOID BASE HYDROXYLASE 2)	S.X.	H.G.	Please select
0.14	15.8	Ta.8034.1.A1_at	BQ161157	-	-	2e-3	At3g56480	myosin heavy chain-related	S.X.	H.G.	Please select
0.13	14.6	Ta.25251.1.S1_at	CD373624	-	-	2e-20	At5g13640	ATPDAT	S.X.	H.G.	Please select
0.08	9.4	Ta.12682.1.A1_at	BQ170634	-	-	1e+0	At3g22210	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
6.4	98.2	GSM250914	Tc_7dpi_inoculated_rep3	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.4	97.7	GSM324490	Si+ B- rep1	GSE12936	Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
4.8	97.2	GSM250902	Tc_7dpi_inoculated_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.5	96.9	GSM250908	Tc_7dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.4	96.8	GSM250903	TcLr1_7dpi_mock_rep1	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.3	96.7	GSM298081	Leaf tissue of Solstice at 9 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
4.0	96.3	GSM298079	Leaf tissue of Solstice at 5 weeks post germination, biological rep 1	GSE11774	Expression data from cold treated wheat cultivars
3.8	96.0	GSM298080	Leaf tissue of Solstice at 5 weeks post germination, biological rep 2	GSE11774	Expression data from cold treated wheat cultivars
3.6	95.6	GSM250890	Tc_3dpi_inoculated_rep2	GSE9915	Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
3.5	95.4	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.23	5e-88	325	Ta.12796.2.S1_s_at	CA628522	-	-	2e-3	At5g56550	OXS3 (OXIDATIVE STRESS 3)	C.G.	S.X.	Please select
0.10	3e-49	196	TaAffx.95321.1.S1_at	BJ278226	-	-	2e+0	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please select
0.10	3e-49	196	TaAffx.95321.1.S1_s_at	BJ278226	-	-	2e+0	At1g27450	APT1 (ADENINE PHOSPHORIBOSYL TRANSFERASE 1)	C.G.	S.X.	Please select
0.02	7e-1	36	TaAffx.81087.1.S1_at	CA689656	-	-	4e+0	At3g29639	-	C.G.	S.X.	Please select
0.01	7e-1	36	Ta.29407.1.A1_at	CK193004	-	-	1e-1	At5g54531	unknown protein	C.G.	S.X.	Please select
0.01	7e-1	36	Ta.27072.1.S1_at	BJ274572	-	-	4e-6	At1g17760	CSTF77	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.65435.1.S1_at	BJ246496	-	-	5e+0	At2g05400	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select
0.01	3e+0	34	TaAffx.4084.1.S1_at	BJ261168	-	-	2e-1	At4g09080	TOC75-IV	C.G.	S.X.	Please select
0.02	3e+0	34	TaAffx.1861.3.A1_at	BJ262545	-	-	3e-1	At1g31390	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.11	8e-16	85	Arabidopsis thaliana	At5g01990	830729	auxin efflux carrier family protein	F:auxin:hydrogen symporter activity;P:auxin polar transport;C:integral to membrane;FPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-2	42	Glycine max	GmaAffx.25445.1.S1_at	AW156230	-	-	9e-10	At5g01990	auxin efflux carrier family protein	C.G.	S.X.	Please select
0.65	0	1277	Hordeum vulgare	Contig5580_s_at	Contig5580	-	-	7e-11	At5g01990	auxin efflux carrier family protein	C.G.	S.X.	Please select
0.42	5e-145	515	Oryza sativa	Os.38376.2.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.10	2e-5	52	Populus trichocarpa	PtpAffx.219829.1.S1_at	pmrna35973	hypothetical protein	-	1e-57	At5g01990	auxin efflux carrier family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	4e-9	61	Vitis vinifera	1611919_at	CB919145	hypothetical protein LOC100246780	-	4e-14	At5g01990	auxin efflux carrier family protein	C.G.	S.X.	Please select
0.02	5e+0	32	Zea mays	Zm.12604.1.A1_at	BQ163028	-	-	1e+0	At4g11350	transferase, transferring glycosyl groups	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage