Gene omics information

Query gene ID	Ta.1275.1.S1_at
Gene name
Organism	Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.40	58.4	Ta.1275.1.S1_at	CA619292	-	-	1e+1	At2g36100	integral membrane family protein	S.X.	H.G.	Please select
0.46	66.8	Ta.3840.1.S1_at	CD919677	-	-	4e-5	At5g21170	5'-AMP-activated protein kinase beta-2 subunit, putative	S.X.	H.G.	Please select
0.40	58.4	Ta.19456.1.A1_s_at	CD865926	-	-	3e-1	At2g20875	EPF1 (EPIDERMAL PATTERNING FACTOR 1)	S.X.	H.G.	Please select
0.29	39.2	Ta.20649.1.S1_x_at	BU100263	-	-	7e-11	At1g68020	ATTPS6	S.X.	H.G.	Please select
0.27	35.6	TaAffx.47673.1.S1_at	BQ806349	-	-	3e-9	At5g35460	unknown protein	S.X.	H.G.	Please select
0.25	32.1	Ta.242.1.S1_at	AF244997.1	ADP-glucose pyrophosphorylase	-	2e-122	At5g48300	ADG1 (ADP GLUCOSE PYROPHOSPHORYLASE 1)	S.X.	H.G.	Please select
0.21	25.5	TaAffx.55869.1.S1_at	CA660064	-	-	6e-2	At1g36272	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.3	99.8	GSM314289	tissue type: 22 DAP endosperm - rep3	GSE12508	Transcription patterns during wheat development
23.6	99.8	GSM314287	tissue type: 22 DAP endosperm - rep1	GSE12508	Transcription patterns during wheat development
20.5	99.7	GSM314288	tissue type: 22 DAP endosperm - rep2	GSE12508	Transcription patterns during wheat development
9.5	99.1	GSM343682	Wheat var. Kennedy_control_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.3	99.0	GSM343688	Wheat var. Kennedy_Fp inoculated_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.0	99.0	GSM343685	Wheat var. Kennedy_control_rep3	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
8.3	98.8	GSM343678	Wheat var. Kennedy_control_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.3	98.6	GSM343687	Wheat var. Kennedy_Fp inoculated_rep2	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.8	97.2	GSM343686	Wheat var. Kennedy_Fp inoculated_rep1	GSE13660	Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
4.7	97.1	GSM314273	tissue type: floral bracts, before anthesis - rep2	GSE12508	Transcription patterns during wheat development

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.49	5e-165	581	Ta.1275.3.S1_a_at	CA611468	-	-	4e+0	At4g13830	J20 (DNAJ-LIKE 20)	C.G.	S.X.	Please select
0.37	1e-113	410	Ta.1275.2.A1_at	CA617036	-	-	4e+0	At4g10250	ATHSP22.0	C.G.	S.X.	Please select
0.17	5e-26	119	TaAffx.107803.1.S1_at	CA695052	-	-	3e-2	At5g27440	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	38	TaAffx.84986.1.S1_at	CA626551	-	-	1e-21	At3g58700	60S ribosomal protein L11 (RPL11B)	C.G.	S.X.	Please select
0.02	2e-1	38	TaAffx.58557.1.S1_at	CA618583	-	-	4e+0	At4g27350	unknown protein	C.G.	S.X.	Please select
0.02	2e-1	38	TaAffx.58320.1.S1_at	CA620596	-	-	2e-69	At5g45775	60S ribosomal protein L11 (RPL11D)	C.G.	S.X.	Please select
0.02	2e-1	38	TaAffx.113782.1.S1_at	CA605352	-	-	3e-81	At4g18730	RPL16B	C.G.	S.X.	Please select
0.03	2e-1	38	TaAffx.112826.3.S1_x_at	CA623588	-	-	7e-22	At5g45775	60S ribosomal protein L11 (RPL11D)	C.G.	S.X.	Please select
0.01	2e-1	38	Ta.303.2.S1_at	CA668994	-	-	3e+0	At2g30860	ATGSTF9 (GLUTATHIONE S-TRANSFERASE PHI 9)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+1	32	Arabidopsis thaliana	At2g36100	818183	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.02	9e-1	36	Glycine max	HgAffx.6261.1.S1_at	CB825950	-	-	4e+0	At3g49470	NACA2 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 2)	C.G.	S.X.	Please select
0.71	0	1213	Hordeum vulgare	Contig4150_at	Contig4150	-	-	3e+0	At1g36000	LBD5 (LOB DOMAIN-CONTAINING PROTEIN 5)	C.G.	S.X.	Please select
0.49	1e-99	365	Oryza sativa	Os04g0641400	AK062620.1	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	2e-1	At2g14700	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	2e-1	38	Populus trichocarpa	PtpAffx.203843.1.S1_at	pmrna7586	hypothetical protein	-	7e+0	At5g55110	stigma-specific Stig1 family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.02	1e+1	30	Vitis vinifera	1620494_at	CF414991	-	-	1e+0	At5g55190	RAN3 (RAN GTPASE 3)	C.G.	S.X.	Please select
0.37	5e-49	194	Zea mays	Zm.3709.1.S1_s_at	AY105883.1	RNA recognition motif containing protein	-	3e+0	At1g14340	RNA recognition motif (RRM)-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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