CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.12685.1.S1_x_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.61 82.0 Ta.12685.1.S1_x_at CA722001 - - 1e-1 At2g28930 APK1B S.X. H.G.
0.67 86.3 Ta.12685.1.S1_at CA722001 - - 1e-1 At2g28930 APK1B S.X. H.G.
0.44 64.5 Ta.26378.1.A1_s_at CD490910 - - 2e+0 At2g18530 protein kinase family protein S.X. H.G.
0.39 56.1 TaAffx.16626.2.S1_at BJ231566 - - 4e-1 At5g39540 - S.X. H.G.
0.38 54.7 Ta.21379.1.S1_at CA674527 - - 1e+0 At1g77655 unknown protein S.X. H.G.
0.13 14.6 Ta.30251.1.A1_at BJ241342 - - 2e+0 At4g15733 SCRL11 (SCR-Like 11) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.8 99.7 GSM298070 Leaf tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
20.5 99.7 GSM298069 Leaf tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
12.4 99.4 GSM298091 Leaf tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
10.7 99.2 GSM314273 tissue type: floral bracts, before anthesis - rep2 GSE12508 Transcription patterns during wheat development
7.2 98.5 GSM314274 tissue type: floral bracts, before anthesis - rep3 GSE12508 Transcription patterns during wheat development
6.5 98.3 GSM298094 Crown tissue of Solstice at 9 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
6.5 98.3 GSM298090 Leaf tissue of Solstice at 5 weeks post germination GSE11774 Expression data from cold treated wheat cultivars
6.2 98.1 GSM298075 Crown tissue of Paragon at 9 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
5.5 97.8 GSM298082 Leaf tissue of Solstice at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
5.4 97.7 GSM314272 tissue type: floral bracts, before anthesis - rep1 GSE12508 Transcription patterns during wheat development
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.87 0 960 Ta.12685.1.S1_at CA722001 - - 1e-1 At2g28930 APK1B C.G. S.X.
0.27 8e-52 204 Ta.26378.1.A1_s_at CD490910 - - 2e+0 At2g18530 protein kinase family protein C.G. S.X.
0.27 8e-52 204 Ta.26378.1.A1_at CD490910 - - 2e+0 At2g18530 protein kinase family protein C.G. S.X.
0.23 5e-13 75 TaAffx.58666.1.S1_at CA617459 - - 1e+1 At3g28140 calmodulin-binding protein C.G. S.X.
0.06 3e-5 50 TaAffx.26787.1.S1_at CA684955 - - 4e-3 At1g48210 serine/threonine protein kinase, putative C.G. S.X.
0.04 2e-3 44 TaAffx.84937.1.S1_at BJ286240 - - 1e-1 At1g69790 protein kinase, putative C.G. S.X.
0.05 3e-2 40 TaAffx.5447.1.S1_at CA710481 - - 4e+0 At5g03850 40S ribosomal protein S28 (RPS28B) C.G. S.X.
0.04 3e-2 40 Ta.24300.1.S1_at CA668229 - - 3e-5 At1g26970 protein kinase, putative C.G. S.X.
0.04 3e-2 40 Ta.14470.1.S1_a_at CA609850 - - 4e-14 At1g07570 APK1A C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 1e-1 38 Arabidopsis thaliana At2g28930 817442 APK1B F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:plasma membrane;MPOBFVA - - - C.G. S.X.
0.13 2e-4 48 Glycine max GmaAffx.46686.1.S1_at BQ081277 - - 1e-5 At1g07570 APK1A C.G. S.X.
0.09 1e-8 59 Hordeum vulgare Contig17814_at Contig17814 - - 1e-25 At3g01300 protein kinase, putative C.G. S.X.
0.34 9e-81 301 Oryza sativa Os06g0168800 AK111753.1 - Protein kinase 3e-22 At5g15080 protein kinase, putative C.G. S.X.
0.09 6e-13 75 Populus trichocarpa Ptp.5398.1.S1_a_at CV233325 - - 2e-19 At5g15080 protein kinase, putative C.G. S.X.
0.07 2e-3 42 Vitis vinifera 1610364_at BM437363 hypothetical protein LOC100256105 - 4e-10 At5g15080 protein kinase, putative C.G. S.X.
0.11 3e-9 61 Zea mays Zm.4078.1.A1_at BM079694 protein kinase APK1A - 6e-16 At3g01300 protein kinase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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