CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.12676.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.57 79.2 Ta.12676.1.S1_at CK162155 - - 6e-4 At2g43080 AT-P4H-1 (A. THALIANA P4H ISOFORM 1) S.X. H.G.
0.57 79.2 Ta.5482.1.S1_at CA646319 - - 6e-13 At3g62580 - S.X. H.G.
0.20 24.0 Ta.20390.1.S1_x_at BJ316801 - - 5e-12 At4g04950 thioredoxin family protein S.X. H.G.
0.20 24.0 Ta.5482.1.S1_a_at CA646319 - - 6e-13 At3g62580 - S.X. H.G.
0.18 21.0 Ta.5033.2.S1_x_at BJ235748 - - 3e-1 At1g21130 O-methyltransferase, putative S.X. H.G.
0.16 18.2 Ta.23373.2.S1_at CA691239 - - 5e-19 At1g08110 lactoylglutathione lyase, putative / glyoxalase I, putative S.X. H.G.
0.12 13.3 Ta.27110.2.S1_x_at BJ263224 - - 6e-10 At2g32720 CB5-B (CYTOCHROME B5 ISOFORM B) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
3.1 94.5 GSM111187 genotype B68 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
2.9 94.0 GSM138176 genotype A40 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.9 94.0 GSM138175 genotype A81 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.8 93.6 GSM138181 genotype A35 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.8 93.6 GSM111245 genotype G13 developing seed at 5 days after anthesis, biological rep2 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
2.8 93.6 GSM138174 genotype A81 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6 92.9 GSM138148 genotype F29 developing seed at 5 days after anthesis, biological rep1 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6 92.9 GSM111232 genotype H8 developing seed at 5 days after anthesis, biological rep1 GSE4935 wheat expression level polymorphism study 39 genotypes 2 biological reps
2.6 92.9 GSM138173 genotype DH95 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
2.6 92.9 GSM138149 genotype F29 developing seed at 5 days after anthesis, biological rep3 GSE5939 Wheat expression level polymorphism study 36 genotypes 2 biological reps from SB location
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.36 7e-118 424 TaAffx.51846.1.S1_s_at CA717962 - - 4e+0 At3g60280 UCC3 (UCLACYANIN 3) C.G. S.X.
0.36 7e-118 424 TaAffx.51846.1.S1_at CA717962 - - 4e+0 At3g60280 UCC3 (UCLACYANIN 3) C.G. S.X.
0.08 1e-5 52 TaAffx.57942.1.S1_at CA623678 - - 4e+0 At5g27700 structural constituent of ribosome C.G. S.X.
0.03 3e-3 44 Ta.5317.1.S1_at CA637934 - - 1e+0 At5g23790 AtGolS5 (Arabidopsis thaliana galactinol synthase 5) C.G. S.X.
0.01 4e-2 40 Ta.5519.1.S1_x_at CK199483 - - 2e-8 At2g01330 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.01 4e-2 40 Ta.5519.1.S1_s_at CK199483 - - 2e-8 At2g01330 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.02 2e-1 38 Ta.9300.1.S1_at BJ238999 - - 5e-1 At3g08770 LTP6 C.G. S.X.
0.02 2e-1 38 Ta.24639.1.S1_a_at CK199553 - - 2e-3 At5g47090 unknown protein C.G. S.X.
0.02 2e-1 38 Ta.24639.1.S1_x_at CK199553 - - 2e-3 At5g47090 unknown protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 6e-4 46 Arabidopsis thaliana At2g43080 818910 AT-P4H-1 (A. THALIANA P4H ISOFORM 1) Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline),the collagen model peptide (Pro-Pro-Gly)10 and other proline rich peptides. - - - C.G. S.X.
0.05 4e+0 34 Glycine max GmaAffx.85225.1.S1_at AI900872 - - 3e-23 At3g06300 AT-P4H-2 (A. THALIANA P4H ISOFORM 2) C.G. S.X.
0.03 1e+0 34 Hordeum vulgare HU11D20u_at HU11D20u - - 9e-1 At2g45060 - C.G. S.X.
0.51 2e-172 607 Oryza sativa Os.52050.1.S1_at - - - 0 C.G. S.X.
0.14 4e-9 63 Populus trichocarpa PtpAffx.39117.1.S1_at CK096432 hypothetical protein - 1e-23 At2g43080 AT-P4H-1 (A. THALIANA P4H ISOFORM 1) C.G. S.X.
0.03 3e-3 42 Vitis vinifera 1607843_at CB974749 hypothetical protein LOC100241153 - 1e-9 At2g43080 AT-P4H-1 (A. THALIANA P4H ISOFORM 1) C.G. S.X.
0.53 2e-141 502 Zea mays Zm.13054.1.A1_at CA403903 hypothetical protein LOC100273794 - 9e-6 At2g43080 AT-P4H-1 (A. THALIANA P4H ISOFORM 1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage