CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.12576.2.S1_a_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.40 58.4 Ta.12576.2.S1_a_at BJ300510 - - 4e+0 At5g62350 invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22) S.X. H.G.
0.75 89.8 Ta.23734.3.S1_x_at CA605815 - - 1e+0 At5g23405 high mobility group (HMG1/2) family protein S.X. H.G.
0.67 86.3 Ta.23734.3.S1_a_at CA605815 - - 1e+0 At5g23405 high mobility group (HMG1/2) family protein S.X. H.G.
0.61 82.0 Ta.6867.2.S1_a_at BJ263192 - - 3e-4 At3g61050 NTMC2T4 S.X. H.G.
0.53 74.9 Ta.8150.3.S1_a_at CA641945 - - 1e-3 At5g41950 binding S.X. H.G.
0.46 66.8 TaAffx.56992.1.S1_at CA638685 - - 3e-4 At1g30450 CCC1 (CATION-CHLORIDE CO-TRANSPORTER 1) S.X. H.G.
0.42 60.9 Ta.1714.2.S1_at CD877056 - - 4e-132 At3g11130 clathrin heavy chain, putative S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
4.2 96.6 GSM298072 Crown tissue of Paragon at 3 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.1 96.4 GSM298076 Crown tissue of Paragon at 9 weeks post germination, biological rep 2 GSE11774 Expression data from cold treated wheat cultivars
4.0 96.3 GSM298073 Crown tissue of Paragon at 5 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.8 96.0 GSM298071 Crown tissue of Paragon at 3 weeks post germination, biological rep 1 GSE11774 Expression data from cold treated wheat cultivars
3.8 96.0 GSM314261 tissue type: seedling, root - rep2 GSE12508 Transcription patterns during wheat development
3.8 96.0 GSM314254 tissue type: germinating seed, root - rep1 GSE12508 Transcription patterns during wheat development
3.4 95.2 GSM138144 Genotype RL4452 developing seed at 5 days after anthesis, biological rep1 location SB GSE5937 Wheat expression level polymorphism study parental genotypes 2 biological reps from SB location
3.1 94.5 GSM314262 tissue type: seedling, root - rep3 GSE12508 Transcription patterns during wheat development
3.0 94.3 GSM314253 tissue type: germinating seed, coleoptile - rep3 GSE12508 Transcription patterns during wheat development
3.0 94.3 GSM314286 tissue type: 22 DAP embryo - rep3 GSE12508 Transcription patterns during wheat development
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.47 2e-131 468 Ta.12576.1.S1_at CA632954 - - 8e-1 At3g61530 PANB2 C.G. S.X.
0.04 5e-12 71 Ta.4886.1.S1_x_at BQ578966 - - 2e-1 At1g35620 ATPDIL5-2 (PDI-LIKE 5-2) C.G. S.X.
0.04 5e-12 71 Ta.4886.1.S1_s_at BQ578966 - - 2e-1 At1g35620 ATPDIL5-2 (PDI-LIKE 5-2) C.G. S.X.
0.04 2e-2 40 TaAffx.107221.1.S1_at CA704122 - - 3e+0 At5g29560 calcium ion binding C.G. S.X.
0.04 7e-2 38 TaAffx.128336.1.S1_at CA699581 - - 1e+1 At2g23149 unknown protein C.G. S.X.
0.07 3e-1 36 TaAffx.85500.1.S1_at CA622193 - - 4e+0 At4g30460 glycine-rich protein C.G. S.X.
0.04 3e-1 36 Ta.24199.3.S1_at BJ245236 - - 9e-1 At4g26140 BGAL12 (beta-galactosidase 12) C.G. S.X.
0.04 3e-1 36 Ta.24199.3.S1_x_at BJ245236 - - 9e-1 At4g26140 BGAL12 (beta-galactosidase 12) C.G. S.X.
0.04 1e+0 34 TaAffx.52166.1.S1_at CA712020 - - 7e-1 At1g08970 NF-YC9 (NUCLEAR FACTOR Y, SUBUNIT C9) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e+0 32 Arabidopsis thaliana At5g62350 836356 invertase/pectin methylesterase inhibitor family protein / DC 1.2 homolog (FL5-2I22) F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:response to salt stress;C:endomembrane system;P - - - C.G. S.X.
0.05 6e-3 42 Glycine max GmaAffx.53622.1.A1_at BE583854 - - 3e-3 At2g47470 UNE5 (UNFERTILIZED EMBRYO SAC 5) C.G. S.X.
0.42 9e-117 418 Hordeum vulgare Contig12207_at Contig12207 - - 3e+0 At1g14315 - C.G. S.X.
0.34 8e-34 145 Oryza sativa Os02g0550300 9630.m03287 - Thioredoxin-related domain containing protein 3e+0 At5g44720 molybdenum cofactor sulfurase family protein C.G. S.X.
0.06 6e-6 52 Populus trichocarpa PtpAffx.156655.1.S1_at BU875712 hypothetical protein - 6e-15 At1g35620 ATPDIL5-2 (PDI-LIKE 5-2) C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1616742_s_at CF212339 hypothetical protein LOC100250345 - 4e+0 At5g37290 armadillo/beta-catenin repeat family protein C.G. S.X.
0.06 3e-11 67 Zea mays Zm.4809.2.S1_at AY107259.1 protein disulfide isomerase - 3e+0 At1g35620 ATPDIL5-2 (PDI-LIKE 5-2) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage