CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.12414.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 Ta.12414.1.S1_at BQ172285 - - 2e-9 At5g23880 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) S.X. H.G.
0.91 98.2 TaAffx.12795.1.S1_at CA655454 - - 1e+1 At4g16710 glycosyltransferase family protein 28 S.X. H.G.
0.73 89.1 Ta.121.1.S1_at U49387.1 adenylosuccinate synthetase - 1e-15 At3g57610 ADSS (ADENYLOSUCCINATE SYNTHASE) S.X. H.G.
0.67 86.3 Ta.4599.1.S1_at CK200209 - - 4e-28 At5g56680 SYNC1 S.X. H.G.
0.59 79.8 Ta.14416.2.A1_a_at BJ271618 - - 3e-4 At4g31180 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative S.X. H.G.
0.44 64.5 Ta.7226.1.S1_at BJ277021 - - 2e-7 At5g27540 MIRO1 (Miro-related GTP-ase 1) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.5 98.3 GSM139923 Anther telophaseI-telophaseII rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
6.4 98.2 GSM139914 Anther pre-meiosis rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.7 97.1 GSM139917 Anther leptotene-pachytene rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.7 97.1 GSM139922 Anther telophaseI-telophaseII rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.4 96.8 GSM139918 Anther leptotene-pachytene rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.4 96.8 GSM139916 Anther leptotene-pachytene rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.3 96.7 GSM139920 Anther diplotene-anaphaseI rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
4.1 96.4 GSM139929 Anther immature pollen rep2 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.9 96.1 GSM139924 Anther telophaseI-telophaseII rep3 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
3.7 95.8 GSM139912 Anther pre-meiosis rep1 GSE6027 Microarray expression analysis of meiosis and microsporogenesis in hexaploid bread wheat
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 7e-6 52 Ta.26705.1.S1_at CD491625 - - 6e+0 At2g20700 unknown protein C.G. S.X.
0.03 4e-1 36 TaAffx.110804.1.S1_at CA654042 - - 4e+0 At3g60600 VAP (VESICLE ASSOCIATED PROTEIN) C.G. S.X.
0.02 4e-1 36 Ta.13164.1.S1_at BQ171469 - - 4e-2 At5g08790 ATAF2 C.G. S.X.
0.03 2e+0 34 TaAffx.132745.2.S1_at BQ608683 - - 4e+0 At1g63960 unknown protein C.G. S.X.
0.01 2e+0 34 Ta.9254.1.S1_at CD932508 - - 9e-10 At3g08910 DNAJ heat shock protein, putative C.G. S.X.
0.03 2e+0 34 Ta.8349.1.A1_at BQ161772 - - 8e-2 At5g11930 glutaredoxin family protein C.G. S.X.
0.01 2e+0 34 Ta.5367.1.S1_s_at CK193816 NAC domain transcription factor - 1e-3 At1g01720 ATAF1 C.G. S.X.
0.02 6e+0 32 TaAffx.65104.1.S1_at BJ261522 - - 2e+0 At3g12120 FAD2 (FATTY ACID DESATURASE 2) C.G. S.X.
0.02 6e+0 32 TaAffx.43302.1.A1_at BJ265059 - - 4e+0 At5g63168 unknown protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e-9 63 Arabidopsis thaliana At5g23880 832453 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) Encodes a protein similar to the 100kD subunit of cleavage and polyadenylation specificity factor (CPSF), the factor responsible for the recognition of the AAUAAA motif during mRNA polyadenylation. The protein interacts with a portion of a nuclear poly(A) polymerase. It is likely to be a part of the mRNA 3'end formation apparatus. - - - C.G. S.X.
0.03 5e-1 36 Glycine max GmaAffx.6759.1.S1_at BG157605 - - 2e+0 At1g08280 glycosyl transferase family 29 protein / sialyltransferase family protein C.G. S.X.
0.72 0 722 Hordeum vulgare Contig16128_at Contig16128 - - 7e-15 At5g23880 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) C.G. S.X.
0.22 3e-108 393 Oryza sativa Os09g0569400 AK063384.1 - RNA-metabolising metallo-beta-lactamase domaincontaining protein 7e-21 At5g23880 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) C.G. S.X.
0.10 4e-14 79 Populus trichocarpa PtpAffx.103932.1.S1_at CX175756 - - 5e-20 At5g23880 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1614756_at CB003977 - - 3e-1 At1g26761 unknown protein C.G. S.X.
0.15 7e-7 54 Zea mays Zm.4238.1.A1_at BM073006 cleavage and polyadenylation specificity factor, 100 kDa subunit - 8e-1 At2g14282 SCRL18 (SCR-Like 18) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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