CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.12339.1.S1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 Ta.12339.1.S1_at BT009250.1 - - 5e-15 At1g24400 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) S.X. H.G.
0.50 72.4 Ta.14315.1.S1_at BU099779 - - 5e+0 At5g05230 ubiquitin-protein ligase S.X. H.G.
0.50 72.4 Ta.12339.1.S1_s_at BT009250.1 - - 5e-15 At1g24400 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) S.X. H.G.
0.50 72.4 Ta.28479.1.S1_at BJ286275 - - 9e-6 At5g40780 LHT1 S.X. H.G.
0.32 44.4 Ta.25985.1.A1_at CD454279 - - 1e+0 At4g03965 protein binding / zinc ion binding S.X. H.G.
0.19 22.4 Ta.10084.1.S1_at AF110180.1 high-affinity phosphate transporter PT1 - 3e-7 At5g43360 PHT3 (PHOSPHATE TRANSPORTER 3) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
19.2 99.7 GSM250914 Tc_7dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
14.5 99.5 GSM324488 Si- B+ rep2 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
11.5 99.3 GSM143517 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
11.3 99.3 GSM324487 Si- B+ rep1 GSE12936 Transcriptomic analysis of the effect of silicon on wheat plants infected or uninfected with powdery mildew
9.7 99.1 GSM250902 Tc_7dpi_inoculated_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
9.5 99.1 GSM143515 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
8.3 98.8 GSM143519 Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.6 98.3 GSM143520 Thatcher_Lr34 (susceptible), rust inoculated distal leaf, replication 3 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.6 98.3 GSM143516 Thatcher_Lr34 (susceptible), rust inoculated basal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
6.6 98.3 GSM250908 Tc_7dpi_inoculated_rep2 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.85 0 2924 Ta.12339.1.S1_s_at BT009250.1 - - 5e-15 At1g24400 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) C.G. S.X.
0.38 3e-155 549 Ta.28479.1.S1_at BJ286275 - - 9e-6 At5g40780 LHT1 C.G. S.X.
0.53 2e-128 460 Ta.3869.1.S1_at CA674403 - - 7e-14 At5g40780 LHT1 C.G. S.X.
0.25 3e-115 416 TaAffx.80471.1.S1_at CA696665 - - 3e-7 At1g24400 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) C.G. S.X.
0.25 3e-115 416 TaAffx.80471.1.S1_x_at CA696665 - - 3e-7 At1g24400 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) C.G. S.X.
0.12 3e-41 171 TaAffx.7030.1.S1_at CA670474 - - 1e-2 At5g40780 LHT1 C.G. S.X.
0.05 2e-11 71 Ta.4323.1.A1_at BJ264015 - - 5e-15 At1g24400 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) C.G. S.X.
0.09 3e-4 48 TaAffx.24751.1.S1_at CA713136 - - 2e-1 At1g25530 lysine and histidine specific transporter, putative C.G. S.X.
0.02 4e-3 44 Ta.30603.1.S1_x_at BJ239996 - - 6e-7 At2g36590 ProT3 (PROLINE TRANSPORTER 3) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 5e-15 83 Arabidopsis thaliana At1g24400 839057 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) High-affinity transporter for neutral and acidic amino acids, expressed in tapetum tissue of anthers - - - C.G. S.X.
0.06 1e-13 79 Glycine max GmaAffx.48461.1.S1_at AW396191 - - 4e-15 At1g24400 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) C.G. S.X.
0.17 4e-23 109 Hordeum vulgare Contig15915_at Contig15915 - - 2e-3 At1g24400 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) C.G. S.X.
0.60 0 1298 Oryza sativa Os08g0127100 AK065217.1 - Lysine and histidine specific transporter 3e-19 At5g40780 LHT1 C.G. S.X.
0.21 4e-10 67 Populus trichocarpa PtpAffx.208250.1.S1_at pmrna16421 lysine/histidine transporter - 1e-14 At1g24400 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) C.G. S.X.
0.09 1e-12 73 Vitis vinifera 1617470_s_at BQ797931 similar to LHT1 (LYSINE HISTIDINE TRANSPORTER 1); amino acid transmembrane transporter - 6e-11 At1g48640 lysine and histidine specific transporter, putative C.G. S.X.
0.46 1e-173 609 Zea mays Zm.15307.1.A1_at CF014037 - - 2e-11 At1g24400 LHT2 (LYSINE HISTIDINE TRANSPORTER 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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