CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.12104.2.S1_a_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.50 72.4 Ta.12104.2.S1_a_at CA633742 - - 1e-21 At5g53350 CLPX S.X. H.G.
0.67 86.3 TaAffx.107805.1.S1_at CA695039 - - 2e-4 At2g36790 UGT73C6 (UDP-glucosyl transferase 73C6) S.X. H.G.
0.40 58.4 Ta.12066.1.S1_s_at BQ171512 - - 5e-6 At4g24160 hydrolase, alpha/beta fold family protein S.X. H.G.
0.40 58.4 Ta.3064.3.S1_a_at CA629476 - - 1e+0 At3g47710 bHLH family protein S.X. H.G.
0.34 48.1 Ta.28628.1.A1_at BQ162670 - - 6e+0 At3g22260 OTU-like cysteine protease family protein S.X. H.G.
0.29 39.2 Ta.29215.1.S1_at CD934480 - - 5e-5 At1g73650 oxidoreductase, acting on the CH-CH group of donors S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.5 98.9 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.6 98.3 GSM250900 TcLr34_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.4 98.2 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.9 98.0 GSM250903 TcLr1_7dpi_mock_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5 97.8 GSM250884 Tc_3dpi_inoculated_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.5 97.8 GSM250896 Tc_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8 97.2 GSM250904 TcLr1_7dpi_inoculated_rep1 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.8 97.2 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.7 97.1 GSM143499 Jupateco_Lr34 (susceptible), mock inoculated distal leaf, replication 1 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
4.6 97.0 GSM143491 Jupateco_Lr34 (resistant), mock inoculated basal leaf, replication 2 GSE6227 Expression data from rust or mock inoculated, fully expanded flag leaf halves
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.38 0 737 Ta.12104.1.S1_at CD939443 - - 7e-51 At5g53350 CLPX C.G. S.X.
0.09 3e-1 36 Ta.25491.2.S1_a_at CA642165 - - 2e-5 At1g33360 ATP-dependent Clp protease ATP-binding subunit ClpX, putative C.G. S.X.
0.03 4e+0 32 TaAffx.122543.1.S1_at CA659572 - - 3e-1 At2g40080 ELF4 (EARLY FLOWERING 4) C.G. S.X.
0.02 4e+0 32 Ta.346.1.A1_at BJ254518 - - 2e+0 At1g78955 CAMS1 (Camelliol C synthase 1) C.G. S.X.
0.03 2e+1 30 TaAffx.50308.1.S1_at CA742889 - - 8e-1 At3g48185 unknown protein C.G. S.X.
0.03 2e+1 30 TaAffx.3238.3.S1_at CA690524 - - 4e+0 At5g29231 unknown protein C.G. S.X.
0.03 2e+1 30 TaAffx.3238.2.S1_at CA640972 - - 4e+0 At5g29231 unknown protein C.G. S.X.
0.03 2e+1 30 TaAffx.120080.1.S1_at BJ212255 - - 8e-2 At4g04630 unknown protein C.G. S.X.
0.03 2e+1 30 TaAffx.110863.1.S1_at CA652707 - - 6e-1 At2g28230 - C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 1e-21 103 Arabidopsis thaliana At5g53350 835416 CLPX CLP protease regulatory subunit CLPX mRNA, nuclear gene - - - C.G. S.X.
0.23 3e-29 129 Glycine max GmaAffx.39589.1.S1_at BU546019 - - 2e-74 At1g33360 ATP-dependent Clp protease ATP-binding subunit ClpX, putative C.G. S.X.
0.44 0 714 Hordeum vulgare Contig7587_at Contig7587 - - 5e-48 At5g53350 CLPX C.G. S.X.
0.31 7e-136 484 Oryza sativa Os02g0564400 BI812922 - ATP-dependent Clp protease ATP-binding subunitClpX-like, mitochondrial precursor 2e-42 At5g53350 CLPX C.G. S.X.
0.19 1e-7 57 Populus trichocarpa PtpAffx.223283.1.S1_at pmrna41201 hypothetical protein - 2e-17 At5g49840 ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding C.G. S.X.
0.04 2e-2 38 Vitis vinifera 1611200_at CF203038.1 - - 3e-1 At5g24610 unknown protein C.G. S.X.
0.29 7e-31 133 Zea mays Zm.1713.1.A1_at BF728381 hypothetical protein LOC100272327 - 1e-1 At1g16870 mitochondrial 28S ribosomal protein S29-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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