CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID Ta.12083.1.A1_at

Gene name

Organism Triticum aestivum

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 98.2 Ta.12083.1.A1_at CD885615 - - 1e+0 At5g17470 calmodulin-related protein, putative S.X. H.G.
0.73 89.1 Ta.25402.1.S1_at CK160504 - - 4e-42 At1g11430 plastid developmental protein DAG, putative S.X. H.G.
0.42 60.9 TaAffx.53324.1.S1_x_at CA693604 - - 9e+0 At4g09070 - S.X. H.G.
0.36 51.9 Ta.18072.1.S1_at CA628068 - - 2e+0 At1g79260 unknown protein S.X. H.G.
0.29 39.2 Ta.494.1.S1_at CK155824 - - 5e-30 At1g02560 CLPP5 (NUCLEAR ENCODED CLP PROTEASE 5) S.X. H.G.
0.25 32.1 Ta.1517.1.S1_at CA629173 porphobilinogen deaminase - 1e-5 At5g08280 HEMC (HYDROXYMETHYLBILANE SYNTHASE) S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
16.0 99.6 GSM343678 Wheat var. Kennedy_control_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
15.7 99.6 GSM343682 Wheat var. Kennedy_control_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
14.9 99.5 GSM343685 Wheat var. Kennedy_control_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
12.8 99.4 GSM343687 Wheat var. Kennedy_Fp inoculated_rep2 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
12.2 99.4 GSM343688 Wheat var. Kennedy_Fp inoculated_rep3 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
9.1 99.0 GSM343686 Wheat var. Kennedy_Fp inoculated_rep1 GSE13660 Gene expression analysis of the wheat response to infection by Fusarium pseudograminearum
7.0 98.5 GSM250899 TcLr34_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
6.7 98.4 GSM250895 Tc_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
5.8 97.9 GSM250898 TcLr1_3dpi_inoculated_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
4.9 97.3 GSM250897 TcLr1_3dpi_mock_rep3 GSE9915 Transcript profiling of Lr1- and Lr34-mediated leaf rust resistance in wheat
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Ta.6942.3.A1_a_at CA647500 - - 5e-15 At1g52360 coatomer protein complex, subunit beta 2 (beta prime), putative C.G. S.X.
0.03 5e+0 32 TaAffx.23915.1.S1_at CA728335 - - 1e+1 At5g10336 unknown protein C.G. S.X.
0.02 5e+0 32 TaAffx.113419.1.S1_at CA647281 - - 2e-2 At4g23320 protein kinase family protein C.G. S.X.
0.02 5e+0 32 Ta.5213.1.A1_at BJ274095 - - 4e-24 At1g77130 PGSIP2 (PLANT GLYCOGENIN-LIKE STARCH INITIATION PROTEIN 2) C.G. S.X.
0.02 5e+0 32 Ta.1111.3.S1_at BJ295064 - - 3e-8 At1g20580 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative C.G. S.X.
0.03 2e+1 30 TaAffx.83306.1.S1_at CA658933 - - 1e+1 At5g66400 RAB18 (RESPONSIVE TO ABA 18) C.G. S.X.
0.03 2e+1 30 TaAffx.59305.2.S1_at CA697987 - - 4e+0 At5g27910 NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8) C.G. S.X.
0.03 2e+1 30 TaAffx.40769.1.A1_at BJ256252 - - 4e+0 At4g21510 F-box family protein C.G. S.X.
0.03 2e+1 30 TaAffx.121855.1.S1_at BJ209711 - - 4e+0 At5g49300 zinc finger (GATA type) family protein C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e+0 34 Arabidopsis thaliana At5g17470 831613 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOB - - - C.G. S.X.
0.03 3e-2 40 Glycine max GmaAffx.48194.1.S1_at BE658529 - - 3e-4 At3g50360 ATCEN2 (CENTRIN2) C.G. S.X.
0.74 0 900 Hordeum vulgare Contig17073_at Contig17073 - - 2e+0 At5g17470 calmodulin-related protein, putative C.G. S.X.
0.10 3e-95 349 Oryza sativa Os03g0597200 AK120622.1 - Protein prenyltransferase domain containingprotein 7e-1 At3g53700 MEE40 (maternal effect embryo arrest 40) C.G. S.X.
0.03 7e+0 32 Populus trichocarpa PtpAffx.223589.1.S1_at pmrna41650 hypothetical protein - 4e+0 At2g19830 SNF7.2 C.G. S.X.
0.03 6e-3 40 Vitis vinifera 1618319_at BQ794118 - - 4e+0 At3g60670 zinc-binding protein, putative C.G. S.X.
0.03 2e+0 32 Zea mays Zm.6422.1.A1_at AY108637.1 INDETERMINATE-related protein 1 - 5e+0 At3g11280 myb family transcription factor C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage